Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02860 1007 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 530 / 6e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 292 / 3e-85 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G06920 262 / 2e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 262 / 3e-74 GUN1 genomes uncoupled 1 (.1) AT5G01110 249 / 5e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 245 / 4e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 246 / 5e-68 PGR3 proton gradient regulation 3 (.1) AT5G55840 242 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 234 / 1e-66 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002107 [exp] 1465 / 0 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 523 / 7e-173 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 520 / 1e-171 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 497 / 5e-163 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 486 / 5e-159 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 273 / 2e-78 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10036020 [exp] 271 / 6e-78 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 257 / 2e-71 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022290 [exp] 250 / 2e-71 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 1013 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 1006 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 550 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 267 / 3e-76 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.015G105400 [exp] 265 / 1e-74 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 258 / 5e-74 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 257 / 5e-74 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 248 / 1e-71 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 257 / 3e-71 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 257 / 4e-71 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013894 pacid=23159508 polypeptide=Lus10013894 locus=Lus10013894.g ID=Lus10013894.BGIv1.0 annot-version=v1.0 ATGGCGATTTGTCCCTCAACCTTCTTCTCCCCCGAATCGGTTACCTTTCTAATGTCTTCCGCCACCTCTCCTCCCTCTCCTCTCCGTCTTCTTGCCCCGT CTCCTCTTAATAACCTCCGCACGGTGACCTGCGCCGCTGCTTCTCCCAAAATCAGCCAGACTCGTGGAACCATGAAAGCTCCCGCGACGGCGGAGCGTGT TGGTGTCCATGAAATCTCCCGCACTCAGCCTCTTAAGTCCAATTGGGTTTATATTAAGGACCATAGTCTCCAGGAGCCCGACGGAAAACCACGAGAAACT CATTCAAGACGAGCAAATTCTTCTTCCAATTCGAATTCCAGGAGCAGGACTCGGCTTGGCAAGCATCGTGACCCCAACCGTGGGAAGCCATGGGTACACC ACCAGCTCTCTCCACTAGGTGACACAGTTCTTAAGTCATTGATCCACCCATCACTCGATGAATCTGAATTTGAAGGAATCTTGAATCGGTTGTTTCAGTC TTATACACATGGGTCGAGTTTGAGTAGTAGTGGTGATAATAAAGGTTTATCTGATGATATTCTGGGGATATTGAAATTTTTGGGGTCCCAGGAGAAATAC GACCTGGCTGCGAATGTGTTTGAGTGGGTGAGAAGCAGGAAAGAATATCAATTGGTTCTCAATAACGCCATGGTCTCTTCACTTATTAAAATGTTTGGTA AAGCAGGGAAAGTTTCTGCAGCGGCTGCTATCTTCACTAGTTTAAATAATGACGGGTTTGCTCTTGATGTTTACGCTTACACATCTTTGGTTACTGTTTA TGCTCGTAACGGGAAGTATAAGGAGGCTTTGATGTTGTTCGATGATATGCTGGAAGCAGGTATCAGGCCCACACTGATAAGTTATAATATCATTCTTAAT GCATATGGGAAAGTGGGTATGCCTTGGAGTAAGACTATAGCTATGCTGGAAAAAATGAAAAGTGATGGGATTACTCCTGATGATTACACATACAACACAC TCATCTCTTGTTGCCGTCAAGGAGGTTTACTTGATAAAGCTGTTGAGGTTTTTGAAGACATGAAATCTGCTGGCTTTTCTCCTGATAAGGTTACTTATAA TGCCTTATTGGATGTTTTCGGGAAGTCTAGACGACCAAAGGAGGCTATGAAGGTATTGAGGGAAATGGAGACTAAAGGGTTTTCTCCTAGCATTGTGACT TACAATTCGTTGATATCTGCTTATGCAGTTGATGGTTTGTTGGATGAAGCTATGGAGCTTAAAGCACAAATGGAGAGCAAGGGAATTAAGCCAGACGTGT ATACATATAGCTCTCTCTTCTCGGGATTCGAGATGGCCGGGAAAGATGAGCATGCGATGAGGGTGTTTGAGGAAATGAGGGATGCAGGGTGCAAACCAAA CACTTGTACTTTCAATGCACTCATCAAAATGCATGGAAACCGGGGAAAGTTTACCGAAATGATGAAGGTTTTCGAGGAGATGGAAGTCTGCAATTGTGCA CCGGATATCGTTACTTGGAATACACTTCTTACCGTGTTCGGGAACAACGGGTTGGACTCTGAAGTCTCGGGGGTGTTCAAGGAAATGAAGAGAGCTGGGT TTGTCCCCGAGAGGGACACTTATAATTCGTTAATTAGTGCGTTCAGTAAATGTGGTGCTTATGAACAAGCCATGATTGTTTACAAGAGAATGCTCGAAGC CGGGGTTACTCCTAACCTATCCTCCTACAATGCTGTCTTAGCAGCACTTGCCAGGGGTGGGCTTTGGGATCAATCAGAGAAGATTATTTCCGAAATGAAG GAGAGGGGTTGCAAACCGAATGAATTTACATACAGTTCTTTGCTTCATGCTTATGCCAACGGGAAAGAGATTGATCGGATGCATTCTCTCGCGGAGCAGA TATATTCGGGAGTAATCGAGCCTCATGCTCTTCTCTTGAAGAGCCTTGTTCTGGTTAATAGCAAAGCCGATCAATTAGTGGAAACTGAACATGCATTCTC GGAGCTTGTAAATAGAGGATTTTCACCGAGCACCAATACATTGAATGCTATGATTTCGGTGTACGGGAGGAGACAGATGGTTGCAAAAGCTGACGAGATG TTGACCTTCATGAACAAACACGGGTACGTTGCGAATTTATCAACATACAATACTGTAATGTACATGCACAGCCGCTCAGGAAGTTACGAGAAGTCGGAAG AAGTATTGAGAGAGATTATCAAGAAGGGACTGAAGCCTGATCGAATCTCGTACAACACGGTTATATTTGCCTACTGTCGTAATGGTTTGATGAAGGAAGC TTCGCGGATACTTTCAGAAATGAAGGGTGCTGGGGTTGTTCCTGATGCAGTCACGTATAACACTTTTATTTCAAGCTATGCAGCCGATTCAATGTTTGAG AGCGCCATTAGTGTTTTGCAGCATATGGTCAAGCAGGGCTGCCAGCCAAACGACAGTACTTACAATGCAATTGTCGATGGATACTGTAAACACGGTCGCC ACTCCGATGCCGCCATGTTCATTAGCAATCTTCAGAAACTCGATCCCCATGCTACGCTGGAAGAAGAGGGGAGGCTATCACAACGTGCTGGCGAAGTGAG AGCTAAAGAAGGAAGAAACAGAGTGCAGAGAGACGGTATTTCGCGTGGTACAGCAGAAACTGTACGGATGGTGAAGGTGAAGTTCAAGCTCCTCCATTTT GGGCATGGATTGAAGGATATAGGCTTTATGAAGTATTGA
AA sequence Show only first row Show all	>Lus10013894 pacid=23159508 polypeptide=Lus10013894 locus=Lus10013894.g ID=Lus10013894.BGIv1.0 annot-version=v1.0 MAICPSTFFSPESVTFLMSSATSPPSPLRLLAPSPLNNLRTVTCAAASPKISQTRGTMKAPATAERVGVHEISRTQPLKSNWVYIKDHSLQEPDGKPRET HSRRANSSSNSNSRSRTRLGKHRDPNRGKPWVHHQLSPLGDTVLKSLIHPSLDESEFEGILNRLFQSYTHGSSLSSSGDNKGLSDDILGILKFLGSQEKY DLAANVFEWVRSRKEYQLVLNNAMVSSLIKMFGKAGKVSAAAAIFTSLNNDGFALDVYAYTSLVTVYARNGKYKEALMLFDDMLEAGIRPTLISYNIILN AYGKVGMPWSKTIAMLEKMKSDGITPDDYTYNTLISCCRQGGLLDKAVEVFEDMKSAGFSPDKVTYNALLDVFGKSRRPKEAMKVLREMETKGFSPSIVT YNSLISAYAVDGLLDEAMELKAQMESKGIKPDVYTYSSLFSGFEMAGKDEHAMRVFEEMRDAGCKPNTCTFNALIKMHGNRGKFTEMMKVFEEMEVCNCA PDIVTWNTLLTVFGNNGLDSEVSGVFKEMKRAGFVPERDTYNSLISAFSKCGAYEQAMIVYKRMLEAGVTPNLSSYNAVLAALARGGLWDQSEKIISEMK ERGCKPNEFTYSSLLHAYANGKEIDRMHSLAEQIYSGVIEPHALLLKSLVLVNSKADQLVETEHAFSELVNRGFSPSTNTLNAMISVYGRRQMVAKADEM LTFMNKHGYVANLSTYNTVMYMHSRSGSYEKSEEVLREIIKKGLKPDRISYNTVIFAYCRNGLMKEASRILSEMKGAGVVPDAVTYNTFISSYAADSMFE SAISVLQHMVKQGCQPNDSTYNAIVDGYCKHGRHSDAAMFISNLQKLDPHATLEEEGRLSQRAGEVRAKEGRNRVQRDGISRGTAETVRMVKVKFKLLHF GHGLKDIGFMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	0	1
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	1.0	0.9703
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	1.7	0.9222
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	4.5	0.9189
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	4.8	0.8618
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	5.5	0.9061
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	8.1	0.9224
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	13.3	0.8691
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	16.1	0.8854
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	16.6	0.9009
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	17.2	0.8545

Compare expression of checked genes

Lus10013894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.