Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 102 / 9e-24 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 89 / 2e-19 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46950 88 / 6e-19 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 86 / 3e-18 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14690 84 / 1e-17 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 83 / 3e-17 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14620 82 / 4e-17 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT2G46960 82 / 5e-17 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14630 81 / 1e-16 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14660 81 / 1e-16 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002108 [exp] 297 / 4e-97 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 152 / 8e-42 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10017775 [exp] 147 / 2e-39 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026085 [exp] 145 / 3e-39 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10036818 [exp] 144 / 1e-38 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 138 / 2e-36 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 137 / 3e-35 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026084 [exp] 134 / 6e-35 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 132 / 3e-34 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139200 [exp] 150 / 3e-41 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 148 / 3e-40 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 147 / 6e-40 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 145 / 4e-39 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 139 / 4e-37 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.010G139300 [exp] 135 / 1e-35 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 134 / 4e-35 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 104 / 2e-24 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.017G000600 [exp] 103 / 2e-24 AT1G17060 166 / 1e-46 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) Potri.018G070900 [exp] 103 / 4e-24 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10013895 pacid=23159505 polypeptide=Lus10013895 locus=Lus10013895.g ID=Lus10013895.BGIv1.0 annot-version=v1.0 ATGAAAATCTACGGTAAGGCTTTTGTGTTCTGGGTTGGACCTCAAGCAAACTTGGTTGTGTCAGAGCTGGATCTGATAAAGAAGTTGCTGCACAACAAAG AAAAAGTTTACGTCAAAGTGGAGACATCATTCTACATCAGGAAGTTACTGGGAGATGGACTTGCCTCCACTCCCGATGGAGAAAAATGGCATCACATGAG AAAGCTAGCCCATTTCGCATTCCATGGAGAAAGCTTGAAAAACATGATTCCAGCAATGTTTTGGAGCGCAGAGAAGATGATAGAGAAATGTTGGAGCTAC ATAGGGAAAGAGATAGACGTGGATGCTGAATTCAAGCTGTTGACATCTGAAGTCATATCTAGGTCTGCTTTTGGGACTAATTACAATCAAGGACAGCTCT TCTCTCAGATGTTGGGTGGATTGACCAAGTTGATCAAGGAAGACCATCAATTCAAGTTCATACCCCCAGCAGTAATCAGGATGCTATGGATACCGCTGCA GATACAGATGAAGTTGGGCTCTCAAGGGATCAACGGACCTTCTTACAGCTTCATCCGTGGCAACAACAGAGAGATCTTGAAAATGAGGCAACAAGTCCGA GCAAGTGGACCCATGAACAATCTGTCACACGCTGTGAATCCCAGAATAGAGCCTCATATCTCCTCCTGGATGAACATCTATGGTAAATCTTTTGTGTTCT GGGCTGGATCAACAGCAAACTTGGTAGTGCCAGAGTTAGATCTGATAAAGAAGTTGATGCACAACAAAGAAAGAGTATACCCCAAAGTGGATACATCATT CGACTTCAGGAAGTTACTGGGAGATGGGCTGGGCACTACTTCCCATAGAGAAAAATGGCTTCGCATGAGAAAATTAGCCCATTGCGCTTTCCATGGAGAA AGCTTAAAATCAACCAACCTTAGTGCCACAGCCCTAGTTCATAATTCATATGTTGCATCATCTTGGATGGTGAATGTTGGTTGGTTGGTTGGTTGGCTGG TTGTTTGTAAAGCACCAGAGGTGGACAAATTGCAGGTGACAAATGTCTTATGA
AA sequence Show only first row Show all	>Lus10013895 pacid=23159505 polypeptide=Lus10013895 locus=Lus10013895.g ID=Lus10013895.BGIv1.0 annot-version=v1.0 MKIYGKAFVFWVGPQANLVVSELDLIKKLLHNKEKVYVKVETSFYIRKLLGDGLASTPDGEKWHHMRKLAHFAFHGESLKNMIPAMFWSAEKMIEKCWSY IGKEIDVDAEFKLLTSEVISRSAFGTNYNQGQLFSQMLGGLTKLIKEDHQFKFIPPAVIRMLWIPLQIQMKLGSQGINGPSYSFIRGNNREILKMRQQVR ASGPMNNLSHAVNPRIEPHISSWMNIYGKSFVFWAGSTANLVVPELDLIKKLMHNKERVYPKVDTSFDFRKLLGDGLGTTSHREKWLRMRKLAHCAFHGE SLKSTNLSATALVHNSYVASSWMVNVGWLVGWLVVCKAPEVDKLQVTNVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10013895 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10000355 [exp]	8.7	0.8556
					Lus10013379 [exp]	11.5	0.8475
					Lus10032670 [exp]	19.4	0.8389
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Lus10012177 [exp]	23.0	0.8346
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	23.4	0.8372
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10025993 [exp]	24.9	0.7200
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	25.8	0.8352
AT5G45120			Eukaryotic aspartyl protease f...		Lus10040624 [exp]	27.1	0.8280
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	33.7	0.8260
					Lus10005830 [exp]	37.0	0.8255

Compare expression of checked genes

Lus10013895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.