Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 553 / 0 Protein phosphatase 2C family protein (.1) AT3G51370 390 / 4e-135 Protein phosphatase 2C family protein (.1.2) AT5G66080 387 / 9e-134 Protein phosphatase 2C family protein (.1) AT3G12620 376 / 3e-129 Protein phosphatase 2C family protein (.1.2) AT5G06750 367 / 1e-125 Protein phosphatase 2C family protein (.1.2.3) AT3G55050 364 / 1e-124 Protein phosphatase 2C family protein (.1.2) AT4G38520 362 / 8e-124 Protein phosphatase 2C family protein (.1.2) AT3G17090 357 / 4e-122 Protein phosphatase 2C family protein (.1.2) AT5G02760 332 / 4e-112 Protein phosphatase 2C family protein (.1) AT3G16560 142 / 9e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002110 [exp] 738 / 0 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10011521 [exp] 489 / 4e-174 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019302 [exp] 487 / 2e-173 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10027825 [exp] 391 / 5e-135 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 387 / 1e-133 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 384 / 3e-132 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 382 / 1e-131 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 382 / 3e-131 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 380 / 5e-131 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 613 / 0 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 590 / 0 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 535 / 0 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.005G108500 [exp] 395 / 6e-137 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 394 / 2e-136 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G177100 [exp] 392 / 2e-135 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 390 / 1e-134 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 389 / 2e-134 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.007G061100 [exp] 388 / 9e-134 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 365 / 4e-125 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10013896 pacid=23159435 polypeptide=Lus10013896 locus=Lus10013896.g ID=Lus10013896.BGIv1.0 annot-version=v1.0 ATGGTGATGCGCTCTTGCTTCCGGCCGTTGGAGAGGTGCTTTGTCCGCCGCGGCGGTGATGGGTTGTTGTGGCACTCTGATTTGAAGCCTCATGCGTCTG GAGACTATTCCATCGCTGCGGTTCAGGCCAATTCTAATATGGAGGATCAGAGCCAGGTTTTCACCTCTCCCTCCGCTACTTATGTTGGGATTTACGATGG ACATGGTGGCCCCGAAGCTTCTAGATTCGTCAACAAGCACTTGTTTCCCTTCATGCACAAATTCGCGAATGAGCAAGGGGGTTTGTCAGTGGATGTGATA AAGAAGGCATTCAATGCAACCGAAGAGGAGTTCTGTCATTTAGTGAACCGATCACTCCAAGTGAAGCCTCAAATTGCTTCAGTAGGGTCTTGCTGTCTAG TTGGTGCCATTTCAAACGATGTGTTATATGTTGCTAATCTTGGAGACTCGAGGGCAGTGCTTGGCAGAAAGGTGAATGGATACAAGTCAAATCCGGTAAT TTCAGAAAGACTATCAACGGACCACAATGTTAAAGCTGAGGAGGTGAGGAAGGAAGTTCAGGCACTTCATCCTGATGATTCACAGATTGTGGTGTATGCT CGGGGATGTTGGAGGATTAAGGGCATCATTCAGGTATCAAGATCTATCGGAGACATGTACCTGAAGAAACCTGAAATCAATAGAGATCCCTTTTTCCAGC AATTTGGAAATCCAATCCCCTTGAAACGGGCTGTAGTGACTGCAGAACCTTCAATCCTAATTAGGAAGCTGAAGCCAGATGACATATTCCTTATATTTGC TTCAGATGGTCTTTGGGATCAATTGAGTGATGAAGAAGCAGTACAGATTGTGTTCAATAACCCCAGAGCTGGGATTGCCAAGAGACTAGTAAGAGCTGCC TTGAACAAAGCAGCAATGAAGAAGGAATTAAGATACGATGACATAAAAGATGTCCAAAAGGGAGTAAGACGGCACATTCACGATGATATCACTGTGATTG TGATATATCTTGATCAACCGAGAAGGTCTTCTTCAAATGGTAGATTGAAGAAGGACGCCATCGGCTGTACGTATGCCCCCATCGACATTTACTCTCGTAA CGCCCCACACTGA
AA sequence Show only first row Show all	>Lus10013896 pacid=23159435 polypeptide=Lus10013896 locus=Lus10013896.g ID=Lus10013896.BGIv1.0 annot-version=v1.0 MVMRSCFRPLERCFVRRGGDGLLWHSDLKPHASGDYSIAAVQANSNMEDQSQVFTSPSATYVGIYDGHGGPEASRFVNKHLFPFMHKFANEQGGLSVDVI KKAFNATEEEFCHLVNRSLQVKPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRKVNGYKSNPVISERLSTDHNVKAEEVRKEVQALHPDDSQIVVYA RGCWRIKGIIQVSRSIGDMYLKKPEINRDPFFQQFGNPIPLKRAVVTAEPSILIRKLKPDDIFLIFASDGLWDQLSDEEAVQIVFNNPRAGIAKRLVRAA LNKAAMKKELRYDDIKDVQKGVRRHIHDDITVIVIYLDQPRRSSSNGRLKKDAIGCTYAPIDIYSRNAPH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	1.0	0.9832
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	1.4	0.9700
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	2.2	0.9393
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	3.5	0.9322
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	4.5	0.9425
					Lus10025204 [exp]	5.3	0.9311
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	6.5	0.9132
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	6.9	0.9439
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	7.9	0.9287
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	8.4	0.9273

Compare expression of checked genes

Lus10013896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.