Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27490 300 / 9e-104 ATCOAE dephospho-CoA kinase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002109 [exp] 422 / 6e-150 AT2G27490 326 / 6e-112 dephospho-CoA kinase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206900 [exp] 365 / 1e-129 AT2G27490 350 / 1e-123 dephospho-CoA kinase family (.1.2) Potri.008G053601 [exp] 218 / 9e-73 AT2G27490 219 / 3e-73 dephospho-CoA kinase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01121 [flax] [poplar] CoaE Dephospho-CoA kinase
Representative CDS sequence Show only first row Show all	>Lus10013897 pacid=23159428 polypeptide=Lus10013897 locus=Lus10013897.g ID=Lus10013897.BGIv1.0 annot-version=v1.0 ATGAGAATAGTGGGATTGACGGGAGGAATCTCGTCGGGGAAAAGCACCGTCTCCTATCTTTTCAAGTCCCATTCGATTCCGGTCGTTGACGCCGACGTCG TTGCTCGGGATGTTCTGAAGAAAGGGACGGGTGGTTATAGAAAAGTAGTTGCAGCATTTGGGGAGGATATTTTGCAAGCAAATGGGGAAGTTGATAGGGC TAAGCTTGGCCAGATTGTTTTCTCTGATCCAGGAAAGCGCCAACTCCTTAACAGGTTACTGGCACCCTTCATATCCTCTGGGATATTTTACGAAGTTCTG AAGCTGTGGCTAAAAGGTCACAAGGTTATCGTCCTTGACGTTCCTTTGTTATTCGAGGCCAAGATGGACAAGTGGACGAACCCTGTTATTGTAGTATGGG TGGATCCTAACACGCAGCTGCATCGCCTTATGGCAAGAGATGGAAGTAACGAGGAGGATGCCCGAAATCGGATAAACGCTCAGATGTCACTGGATATGAA GAGGTCCAAGGCTGACATTGTTGTCGAGAACACTGGTTCGTTAGAGGAGTTGGAAGAAAAATTCTGGACGGTTTTAGCTCAAGTCACGAAGCCTTTAACT TGGACCGAGTTCTGGCTTTCAAGACAGGGAGCTTTCATATCTCTGCTTTCCATTGTTGTTGGAGTAGTTGCTGCCAAAAATCTCTACAAGACTTCATAA
AA sequence Show only first row Show all	>Lus10013897 pacid=23159428 polypeptide=Lus10013897 locus=Lus10013897.g ID=Lus10013897.BGIv1.0 annot-version=v1.0 MRIVGLTGGISSGKSTVSYLFKSHSIPVVDADVVARDVLKKGTGGYRKVVAAFGEDILQANGEVDRAKLGQIVFSDPGKRQLLNRLLAPFISSGIFYEVL KLWLKGHKVIVLDVPLLFEAKMDKWTNPVIVVWVDPNTQLHRLMARDGSNEEDARNRINAQMSLDMKRSKADIVVENTGSLEELEEKFWTVLAQVTKPLT WTEFWLSRQGAFISLLSIVVGVVAAKNLYKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	1.0	0.9162
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	2.6	0.8961
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	3.2	0.9140
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	4.0	0.8992
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	4.5	0.8974
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	4.7	0.8674
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10035780 [exp]	4.9	0.8778
AT5G57000			unknown protein		Lus10006884 [exp]	5.5	0.8971
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	7.5	0.9038
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	9.6	0.8513

Compare expression of checked genes

Lus10013897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.