Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002111 [exp] 217 / 3e-73 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013898 pacid=23159441 polypeptide=Lus10013898 locus=Lus10013898.g ID=Lus10013898.BGIv1.0 annot-version=v1.0 ATGCCATTCCAATTTGGAGGTGATTCCTTCACTAATGGCTCAAAGGAGACTTCTTCTTGGTATTGTTCATCTTTCACATTCCCCAAACCTCAGCCTGCAC CGCCACCTTCTGTGTTCGATTTCTCCGATACTAAACTGAGTAATTTCACAAACTTCCCTGCCACGCATCACAGCTTTCATCCAGGCATGGCCGCAGGTCC AGCTGGAGTTGCACAGGGAGCTTTGTTTCTTCCAGTATTTATACTTCCAGTGATGCCAGTTGTAATCTGTGGTCGCTTTGCGGTAGCAGTTCCCATAAGT CGATTTCCTGGATCAATGGCACCTTCATTCACTGAAGTTCCAAAAGCTCCTGTCTTTGGACATGCTTGCAATGGTTTTCCAACAACACTATCTGCTGGTT CTGGTGTTTGCTACTAA
AA sequence Show only first row Show all	>Lus10013898 pacid=23159441 polypeptide=Lus10013898 locus=Lus10013898.g ID=Lus10013898.BGIv1.0 annot-version=v1.0 MPFQFGGDSFTNGSKETSSWYCSSFTFPKPQPAPPPSVFDFSDTKLSNFTNFPATHHSFHPGMAAGPAGVAQGALFLPVFILPVMPVVICGRFAVAVPIS RFPGSMAPSFTEVPKAPVFGHACNGFPTTLSAGSGVCY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013898 [exp]	0	1
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	4.5	0.8962
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	4.7	0.9214
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10019171 [exp]	6.0	0.8478
					Lus10002746 [exp]	6.4	0.8381
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	8.1	0.9115
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	9.4	0.9005
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	10.1	0.9091
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	10.5	0.8884
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	11.0	0.8415
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	11.1	0.7883

Compare expression of checked genes

Lus10013898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.