Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16250 521 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 127 / 2e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G67480 114 / 2e-27 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 112 / 9e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 108 / 4e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 97 / 2e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G22040 94 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 93 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G14330 92 / 1e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002112 [exp] 771 / 0 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002113 [exp] 162 / 1e-45 AT1G49850 133 / 2e-37 RING/U-box superfamily protein (.1) Lus10022061 [exp] 125 / 1e-31 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10037413 [exp] 116 / 4e-28 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 115 / 9e-28 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 114 / 1e-27 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 112 / 2e-26 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 106 / 1e-24 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 104 / 6e-24 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004500 [exp] 608 / 0 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 140 / 4e-37 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 139 / 9e-37 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 124 / 3e-31 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 124 / 6e-31 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 113 / 4e-27 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 110 / 4e-26 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 110 / 8e-26 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 108 / 3e-25 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.009G091200 [exp] 96 / 5e-22 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10013899 pacid=23159421 polypeptide=Lus10013899 locus=Lus10013899.g ID=Lus10013899.BGIv1.0 annot-version=v1.0 ATGACGAGCGCGTCGGAGCTGTTTTACCAGAGACGGTCGCGCGTTGGCCGGCCTAGCACCGAGTTACCTCTCGCCCTCGACCCTTCCGGTTCCGACCGTG TTTTCCACCTCCGACGCCACCACAGTCATCACGGAAACCATCCGATTCATAGCCACAGCAACACTCCCGGGCGCCATGATTTGGACGGATGCGATCCTCT TCGCAGATCTCTCCATGTCCGCCAGAATTGCCATCGGGTCTCTGAACCATCCTCTGCTCGGTTCGACCAAGGTTCCAGCCAGTATGCATCAAACAACAGT TCCAGCACAGAAACATCCAGCAGCTCAGGCCGGCCTAGAGTGACCTCAAATGAGAGGCTGCCTGGACCAGTACTGCTTGCAAGGGCAAGGCTTCTTGAGA GATTGAGAGGAGTGTCCCTCTCTGGAAGCAGGGAAGATGAACATGAACCTATAATTCCTGGATTGCCAGATGACCTGTCTTTACGTTGCCTGGCGAAGTT GTCACACGGATACCAGGGGAAACTTGAAACTGTCTCCAAAAGGTGGAACCAGTTGATTTGCAGCTCCGAATATGCACATTATAAAGCCAAAAAGGGATGG TGTGGAAATTGGTTGTTTGTTCTAACCGAACAGTCTCAGAGGCAGTGGGTTGCGTATGATCCCGAGGCTGACCGATGGCATCCTCTGCCGAAGATTACAG GAGAGTTTGCTGATTGGCAGCACTTTGGATTCTCTTGTGTCTGTGTTCATAATCGGCTGTTGGTGATTGGAGGAACCTATACGCAACTTGACTCGATTTG CCAAAAGCCTTTCATTACTAATCAGGTGTTAAAGTTTGATCCTTTTACGAAACAATGGTCTGCTGTGGCAACAATGCGGACACCCCGTTCACAGTTCGCA TGCAGTGTGGTTTCTGGGAAGGTTTATGTAGCCGGGGGACGCAACTTATGCTGCACCATGGGGATTTCACTTGCCGAGGTTTATGATCCTCTAACAGACA AATGGGAGGAGTTGCCTTCGATGCCTGTTCCACAAGTGGACTGTTTAGGCTTGTCATTTCGAGGCAAATTTCACGTTTTAAGTGACCAGGCAGGCTGCTT GTCAGATGTGAACATGTCTCAAGGTTTTGATCCATCACTTAGAACATGGGCAACAATGGAGGACATTTGGCCTTTCTCCAGGGTAATGCAGTTTGCAGTC CAGGTAATGGGCGATGGGCAAGTATATACAGTTATTGACTGGGGTGAGAGCCTTATTAAAACAAGGGACTCCGAAGTTGGAGAGTGGTATAACGTTGGCT CTGTTCCTGCTGTGATCCTAAGTGACCATGCACGGGCGTTAGAAGCCTTTGCTTATGGGTTTGCATCCTTGAGAGGTGAACTATATGTCTTGGGCGGGAA AGTTCTCAAGTGGGAAGAAGCAGGAGCTGGGAGGTTCGATATCGTAAGATTGGGTCTGGTGAGGGTTTGCGATCCAAAGGTTAGGCCGTTGAAGTGGAAA GAAACTCGGCCGATGTGTGGGTTTGCACGTGGCTGTATATTGGGATGTGCTTCCTTGGAGGAGGAACAATCTATATGA
AA sequence Show only first row Show all	>Lus10013899 pacid=23159421 polypeptide=Lus10013899 locus=Lus10013899.g ID=Lus10013899.BGIv1.0 annot-version=v1.0 MTSASELFYQRRSRVGRPSTELPLALDPSGSDRVFHLRRHHSHHGNHPIHSHSNTPGRHDLDGCDPLRRSLHVRQNCHRVSEPSSARFDQGSSQYASNNS SSTETSSSSGRPRVTSNERLPGPVLLARARLLERLRGVSLSGSREDEHEPIIPGLPDDLSLRCLAKLSHGYQGKLETVSKRWNQLICSSEYAHYKAKKGW CGNWLFVLTEQSQRQWVAYDPEADRWHPLPKITGEFADWQHFGFSCVCVHNRLLVIGGTYTQLDSICQKPFITNQVLKFDPFTKQWSAVATMRTPRSQFA CSVVSGKVYVAGGRNLCCTMGISLAEVYDPLTDKWEELPSMPVPQVDCLGLSFRGKFHVLSDQAGCLSDVNMSQGFDPSLRTWATMEDIWPFSRVMQFAV QVMGDGQVYTVIDWGESLIKTRDSEVGEWYNVGSVPAVILSDHARALEAFAYGFASLRGELYVLGGKVLKWEEAGAGRFDIVRLGLVRVCDPKVRPLKWK ETRPMCGFARGCILGCASLEEEQSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	0	1
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	1.7	0.8236
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	2.0	0.8248
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	2.6	0.8061
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	4.9	0.8185
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	5.3	0.7940
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	5.4	0.8278
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	5.5	0.8020
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	5.5	0.8135
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	6.3	0.7857
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	6.7	0.8026

Compare expression of checked genes

Lus10013899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.