Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19550 50 / 5e-09 unknown protein AT1G73120 37 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013901 [exp] 61 / 5e-13 AT3G19550 79 / 4e-20 unknown protein Lus10002114 [exp] 57 / 4e-12 AT3G19550 77 / 2e-20 unknown protein Lus10002115 [exp] 57 / 4e-12 AT3G19550 77 / 2e-20 unknown protein Lus10022961 [exp] 52 / 5e-10 AT1G73120 64 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091100 [exp] 59 / 2e-12 AT3G19550 84 / 2e-22 unknown protein Potri.001G296900 [exp] 59 / 2e-12 AT3G19550 83 / 7e-22 unknown protein Potri.010G248600 [exp] 45 / 3e-07 AT1G73120 102 / 3e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013900 pacid=23159500 polypeptide=Lus10013900 locus=Lus10013900.g ID=Lus10013900.BGIv1.0 annot-version=v1.0 ATGTCAAGAGCTGCTGGGAATATAGTTGCAAGAGCTAATGGCTTGTTTTTCCCAAGACAAGTACGGAGCAGGCTCTGTTTCAGCAGTGGTTCTGCTGCAG AGGTCAACCTGCTGCAGAAAGAAAAATTGCTCCGGCGGGATAACCCCCCAGCCTCACCTGGCCGGGTGATGGAATCTTATACCAAGACAAAGACTTCGTG CTGGGTGCCGGACCCTCGAACGGGGATATACTTTCCTGTAGGGCACGAAGTGGTGATGGAGGGTATTCCTGAGAAGGCAGCTCGTTTGGGTCATAATAAC GTCTGGGTTCGAACTGTCGACAGCGTTTAA
AA sequence Show only first row Show all	>Lus10013900 pacid=23159500 polypeptide=Lus10013900 locus=Lus10013900.g ID=Lus10013900.BGIv1.0 annot-version=v1.0 MSRAAGNIVARANGLFFPRQVRSRLCFSSGSAAEVNLLQKEKLLRRDNPPASPGRVMESYTKTKTSCWVPDPRTGIYFPVGHEVVMEGIPEKAARLGHNN VWVRTVDSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19550			unknown protein		Lus10013900 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	2.8	0.9377
					Lus10038743 [exp]	4.1	0.9387
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	4.2	0.9155
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	5.0	0.9349
AT2G25625			unknown protein		Lus10013129 [exp]	5.1	0.9244
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	5.7	0.9328
					Lus10033284 [exp]	6.5	0.9346
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	7.1	0.9180
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	7.5	0.9106
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	7.9	0.9340

Compare expression of checked genes

Lus10013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.