Plant FIBer expression Database

Lus10013901 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19550 77 / 2e-19 unknown protein
AT1G73120 41 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002114
[exp]
126 / 2e-39 AT3G19550 77 / 2e-20 unknown protein
Lus10002115
[exp]
126 / 2e-39 AT3G19550 77 / 2e-20 unknown protein
Lus10013900
[exp]
61 / 4e-13 AT3G19550 50 / 6e-09 unknown protein
Lus10022961
[exp]
49 / 2e-08 AT1G73120 64 / 2e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G296900
[exp]
87 / 1e-23 AT3G19550 83 / 7e-22 unknown protein
Potri.009G091100
[exp]
78 / 1e-19 AT3G19550 84 / 2e-22 unknown protein
Potri.010G248600
[exp]
43 / 4e-06 AT1G73120 102 / 3e-29 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03242 LEA_3 Late embryogenesis abundant protein
Representative CDS sequence
>Lus10013901 pacid=23159477 polypeptide=Lus10013901 locus=Lus10013901.g ID=Lus10013901.BGIv1.0 annot-version=v1.0
ATGATGATGAGGCGCCATCTGAGCGGTGGGCTTCCGAGGAAGTTGAGGAACATGAACTCAACTTCGACGACGGGTGGGCGGCGGGGCAGCGGCCGGAGGA
GGAGTAGCAGTAGCGTTAGCCATCACGACGATGAATCTGCGGCGGCGCCGGCGGCATACGCTATGTGGGTGCCGGATCCTCGAACGGGGATATACTTTCC
GAGAGGGCAGGAATGGGTGATGGAGGATGTGCCGGATAACGCAGCCCGTTTCGGGCAGAGTTACTGGCTTAGGAGCGTCGACGGCGTTGAGAAACCCGAC
CCGGATCACGCCGCCAATGCTGACCGTTATGGACTTTTTGGGACTTGA
AA sequence
>Lus10013901 pacid=23159477 polypeptide=Lus10013901 locus=Lus10013901.g ID=Lus10013901.BGIv1.0 annot-version=v1.0
MMMRRHLSGGLPRKLRNMNSTSTTGGRRGSGRRRSSSSVSHHDDESAAAPAAYAMWVPDPRTGIYFPRGQEWVMEDVPDNAARFGQSYWLRSVDGVEKPD
PDHAANADRYGLFGT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19550 unknown protein Lus10013901
[exp]
0 1
AT1G50380 Prolyl oligopeptidase family p... Lus10032964
[exp]
1.0 0.9982
AT3G19550 unknown protein Lus10002114
[exp]
2.0 0.9951
AT1G78980 SRF5 STRUBBELIG-receptor family 5 (... Lus10034790
[exp]
3.0 0.9931
AT3G19550 unknown protein Lus10002115
[exp]
3.5 0.9888
AT5G64440 ATFAAH fatty acid amide hydrolase (.1... Lus10035974
[exp]
3.5 0.9894
Lus10038743
[exp]
4.5 0.9894
AT1G74220 unknown protein Lus10040518
[exp]
4.6 0.9887
AT4G32110 Beta-1,3-N-Acetylglucosaminylt... Lus10042384
[exp]
6.3 0.9858
AT2G16630 Pollen Ole e 1 allergen and ex... Lus10026279
[exp]
7.2 0.9573
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10039087
[exp]
8.5 0.9777

Lus10013901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.