Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49870 345 / 1e-104 unknown protein AT3G43740 283 / 1e-88 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G21090 280 / 2e-87 Leucine-rich repeat (LRR) family protein (.1) AT1G71830 229 / 4e-64 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 227 / 2e-63 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 218 / 2e-60 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 212 / 2e-58 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 197 / 3e-53 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G10290 130 / 4e-31 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G25560 130 / 6e-31 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002116 [exp] 1026 / 0 AT1G49870 457 / 4e-150 unknown protein Lus10002117 [exp] 415 / 1e-138 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10002579 [exp] 250 / 2e-76 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10020962 [exp] 229 / 2e-64 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10001807 [exp] 207 / 5e-61 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 204 / 6e-60 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10026751 [exp] 200 / 6e-59 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10042755 [exp] 187 / 6e-54 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 188 / 3e-50 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296700 [exp] 478 / 3e-155 AT1G49870 426 / 2e-137 unknown protein Potri.009G090900 [exp] 478 / 3e-155 AT1G49870 451 / 4e-147 unknown protein Potri.001G296500 [exp] 347 / 8e-113 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 332 / 4e-107 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G018800 [exp] 282 / 2e-88 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 272 / 9e-85 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.003G166200 [exp] 254 / 6e-78 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.001G061600 [exp] 249 / 2e-76 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.007G082400 [exp] 229 / 2e-64 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 226 / 4e-63 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013902 pacid=23159461 polypeptide=Lus10013902 locus=Lus10013902.g ID=Lus10013902.BGIv1.0 annot-version=v1.0 ATGGATCTAGGATGCTTGGACTTAGGTTGCCTCGATGCAGTGGACAAGCACTGCCGGCCTCGCCATAGCTCTGGATCAGATAGCGGCGGATCTGATCTGA GCGAGACTGTCTCCTCTTCGGCTTCTAAGTTTGGCAAGAAGAGTTCGCCGAGGGGAAGCGGTCAACCAGCAAATGGTCTAAACAAACTTACATCCCAGAT TAAGAAGCCTACTCGCCGTAAAACTAGTCCACTCAACTGGTCTCCGCGTAAGAAAGGGGATTCATACTTGAAGAGGAAAATTCAAATGTTACAGGAAGTT GATGGCATGAAACAAACTCTGGATGAAACTCTTGAGGATTCAAATCCACACTACTGCAGAGTGATGAGGGAAAAAATAGCAGCAGGGGAGGCTGCACGCA AGGTCAAAGAGGCACAGAAGGCTGCATTGGTCGAAGCATCTTGGTGCCGAATACTTAAAGCTGCTAGGATTCAAAGCAAGGAAGCAGAATACCTCCTTTT CAAAGCAGAAAAGGCTGCTGCTGAAGCTTTTGAAGCAGCAATAGCTGTGGAAGTGATCATGGATGATATGCCAAATTTCCCTCACAGCCATTCCATTTCG AAACCTTCTGCAATAAGTAAAACCGGATCTACTGCTCATAGTGTCAAAGTATCTTTCGAAACACCATTTGAAGTGGATAAAGAAGTGGCTTCAGCAGTTA AAACTGCATTCATGAAGCTTGCCACTAGTGCACATTCCAACGAAGATGAGTTCAGGAGTTTGTTGCAGAAAATTAGTCAGAATCCAGAGACTAGTGTAGG TAACCAAGAATTGACGGAGTGTTCATCAGAATCTGAACCAGATTCTGGCTTCAAAGCCAAGGTAGCATCTGAATACAATGAATCCATGTCTCGAGACTCA AGACAAAGTAGACACAAGAAGAGGCAGTCGTTGGATCTTGTTAATATGATGTTAAACAGGCTTAAATCCTTGAAAGAAGATGAACTGTCTTCTCTGGCCA CTATAGTTGCAACTCGTGGTTTAAATGCTGCATTGGCAGAGATAGAAAGCACTAAGCACATTGCAAGTGGAACTCCCAACGTTCCGCAAAGGTTATCTTC TGTAGATGCACCAGGCGGACATATCAGAAAGAAGCAAGCTGAGTCAGAACTTCCCAGCCTAGATAAGTTTCTGGTCAAGCACATGTCAAAGCTTGAGAAG GAGGTTGAACAAGCTAAGAATAACAGGAAGAAAGAGGCAGGGTCAGGACATCCAGAGAATGCATCGGCTGATTACAACAGTGGAAAACCACAGTTGGATA AGAAGACAAGTGCATGCGAAGCAGTTCCTGATTTGGGAAGTATTCTCGTCAAGCACTCATCAAAGTTTGAGACGGAGATTCAAGAAGCGAAGAAGAATTC AGCTAAAGATTTTCAAATCAGCCACAAGAAACCTGCCAGTGGTTCATCTGATGGTGAAAATGAAAATCAAGATGCAAGAAAGGACAGTGGGGAGTTATCA TCATCTTGGGCCGTCAAGAGGGCGCAGGACCTTGTCCCAGATGTCCTTAGCTTAGATAAGTGTCTCGTCAAGCATGTTTCAAGGCTTGAAAAAGAAGTCC AGGAAGCAAAGAACATAACAAAAGACAGAGAGTCGCGAAATGAGGAAGCAGCGGATAAAGAGAATGTTAACTTGAACAAAGAAGCATTGCCAGGCAAGAT CAGCAGGGAAAGCGAATACAACAAGGTGAAGAGTAAGCAGCAGCAAGCAAACGTCCACAACAATGACGGAGGAGAAGGGTTGGACAAGTTGTTATTAAAG AACGTCTCGAAGCTCGAAAGGGAGAAACTGGAGTGGCGTATGCAGGAAGAAAGTGGCAATAATGTCCAGAGGAGCAGCAGAAACATGCAACTGCAGAGAA ATAACGAAGAAGGAAGTCTGGACCAAATACTGGTGAAACCCAAATCAAGACTGGAGAGGGAGAAGATAAGCGGGTTTGAGGAATCATCAGACAGAGTGGT GTCATCATCAAGCATGTTCATGTCACGTAGACAAGCGAGGGAGAAGGAGCTGAAAGAAGCATGGGATGGGTTGAGTTTTGGGAACTCCCTGAAACCACAT TTGTCCAAACTTGAAAAGGAAAAGGCTGCTTGGATCAAAGCTGAGGAAGAAGAAAGAAGACAAGTGGGGGGGACGGTGTCAAAGAAAGGAGTGAAGAAGA CGGAAGGAGTGGGGAGAAGGACTGTGGAAGAGAAGACTAATAATAATAAGTGGTGCCCTGGTGACTTCATCAGTCAAACTTCTCCCTTTCTCCTCTGTTT TTTCTCTTCCGTTGTTTATCAATTCATTCTTCACAATTCCCTTTCCCCTCTCCTTCAGATTTGTTCCAGTATGGATGGCGCTGCTGCTGGTAATGCTGCT GCTCTCCTTCCACTGTTACTCATCGTCGTTACCACGATGCTGCTCTTTCCCTCCCCTTCCTTCTCCTCCAACACTGAAGGAAATGCGCTGTTCGCAATGA GGAGCAGGCTCTCAGATCCAAACAACGTCCTACAAAGCTGGGACCCAACCCTGGTGAATCCATGTACTTGGTTCCACGTCACCTGCGATTCTCACAATCA TGTGATTCGCCTGGATTTGGGGAACTCTAACGTCTCTGGCACTCTCGGACCTGAGCTTGGACAGCTCCAACACCTTAAGTTCTTGGAACTGTACAGGAAC GACATCAGTGGCGAAATCCCGGAGGAGCTTGGGAATCTGAAGAGTCTTGTGAGCATGGACTTGTATTCCAACAGATTCTCAGGAGTCATACCAAAGTCCT TTGCCAAATTGAAGTCCCTCAGATTCATGCGACTGAATGACAACAAGCTCAAAGGATCAATTCCAAGGGAGCTCATTGCACTTGAGAATCTCAAAGTCTT TGATGTTTGTAATAATGATCTGTGTGGAACAATCCCTGTCGATGGTCCCTTTGCAACTTTCCCCATGACAAGCTATGAGAATAACTCGAGGCTGAATGGA CCGGAGCTGAAGGGACTCGCCATGTACGACTTTGGGTGCTGA
AA sequence Show only first row Show all	>Lus10013902 pacid=23159461 polypeptide=Lus10013902 locus=Lus10013902.g ID=Lus10013902.BGIv1.0 annot-version=v1.0 MDLGCLDLGCLDAVDKHCRPRHSSGSDSGGSDLSETVSSSASKFGKKSSPRGSGQPANGLNKLTSQIKKPTRRKTSPLNWSPRKKGDSYLKRKIQMLQEV DGMKQTLDETLEDSNPHYCRVMREKIAAGEAARKVKEAQKAALVEASWCRILKAARIQSKEAEYLLFKAEKAAAEAFEAAIAVEVIMDDMPNFPHSHSIS KPSAISKTGSTAHSVKVSFETPFEVDKEVASAVKTAFMKLATSAHSNEDEFRSLLQKISQNPETSVGNQELTECSSESEPDSGFKAKVASEYNESMSRDS RQSRHKKRQSLDLVNMMLNRLKSLKEDELSSLATIVATRGLNAALAEIESTKHIASGTPNVPQRLSSVDAPGGHIRKKQAESELPSLDKFLVKHMSKLEK EVEQAKNNRKKEAGSGHPENASADYNSGKPQLDKKTSACEAVPDLGSILVKHSSKFETEIQEAKKNSAKDFQISHKKPASGSSDGENENQDARKDSGELS SSWAVKRAQDLVPDVLSLDKCLVKHVSRLEKEVQEAKNITKDRESRNEEAADKENVNLNKEALPGKISRESEYNKVKSKQQQANVHNNDGGEGLDKLLLK NVSKLEREKLEWRMQEESGNNVQRSSRNMQLQRNNEEGSLDQILVKPKSRLEREKISGFEESSDRVVSSSSMFMSRRQAREKELKEAWDGLSFGNSLKPH LSKLEKEKAAWIKAEEEERRQVGGTVSKKGVKKTEGVGRRTVEEKTNNNKWCPGDFISQTSPFLLCFFSSVVYQFILHNSLSPLLQICSSMDGAAAGNAA ALLPLLLIVVTTMLLFPSPSFSSNTEGNALFAMRSRLSDPNNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNVSGTLGPELGQLQHLKFLELYRN DISGEIPEELGNLKSLVSMDLYSNRFSGVIPKSFAKLKSLRFMRLNDNKLKGSIPRELIALENLKVFDVCNNDLCGTIPVDGPFATFPMTSYENNSRLNG PELKGLAMYDFGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49870			unknown protein		Lus10013902 [exp]	0	1
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	2.6	0.8312
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	4.6	0.7765
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	8.2	0.8071
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	10.4	0.8012
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	12.1	0.8156
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	13.5	0.8178
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	15.3	0.7824
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	19.0	0.7691
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	20.9	0.7811
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	23.2	0.7883

Compare expression of checked genes

Lus10013902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.