Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34150 254 / 9e-71 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 254 / 5e-70 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 242 / 1e-64 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1) AT2G38440 196 / 1e-50 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 179 / 1e-45 ATSCAR4, WAVE3 SCAR family protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001897 [exp] 1885 / 0 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10029437 [exp] 197 / 1e-50 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10022757 [exp] 175 / 5e-44 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057100 [exp] 629 / 0 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 374 / 1e-110 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.016G129000 [exp] 201 / 4e-52 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.006G105800 [exp] 199 / 3e-51 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013904 pacid=23170071 polypeptide=Lus10013904 locus=Lus10013904.g ID=Lus10013904.BGIv1.0 annot-version=v1.0 ATGCCGCTGGTTAGGTTTGAGGTCAGGAACCAGTACGCTTTGGGCCATCCGGAGCTCTACAAGGAGGCTGACGTGGATGATCCCAAGGCCGTTCTCGACG GTGTTGCCGTCGCCGGTCTCGTCGGGATCTTGCGCCAATTAGGCGATCTCGCTGAATTTGCAGCAGAGGTGTTTCACGGATTGCAGGAGCAGCTAACGAC GACAGCTTCTCGGAGTCAGAAGTTGAAGCTTCGAGTGCAGAACATTGAAGCTGCGTTGCCTCCTATTGAGAAGGCTATATTGGCACAGAATAGCCACATC CATTTTGCTTACACTGCTGGTTCTGAGTGGCATCCTAGAATCCGGAGTGAGCAGAATCACTTCATCTACAATGACTTGCCCCGTTTCATTATGGATTCTT ATGAAGAATGTCGTGATCCGCCACGCTTTCATATACTTGACAAATTTGACACTGGTGGTCCAGGGTCGTGTTTGAAGAGGTATTCAGATCCAACCTTCTT TCGAAGAGCGTCAGGTGGCTTCAAGGAACATGATGCTGAGAAAGTTCAAAGAGATAAAAAGGCTCGCAAAATCAAGAAAAAGAGATCACTTCGAAGGAAA GGTAGCTCACTGCAGAATGGGTCAATCTCAAGTCACAGCGAGAGATCCCAGTTTTTTCAGCCAACAGTTAATGGACGGAGTTCTTCTTCACATACGGCCT CTAATATCGACTTGCCATTGAAATCTGAGATTGGTGATCGTTCAAATTCTATTGATTCAGGAAATGGGTCAAATCATATTGAATGTGTTTTCCGTCCTAG TTCTTCTGCACAACCTGAGGAACAGAAGTCTAATGGATTCTCGTCAAGGTCATTCCAGGGTGATGATTCCCGTGATTCTGGCTTTTCGGAGGGACAGTCC AGGGTTGCTCATGATAGTTTTCTGCATTGTTCCTCACCAAAGCAGATTCACCATAGGTCTCCTGGTGTTACTTGGGTTGAAAAGGAAGAATGCGAAGAGC CTGGAGTTGCTGATGATAGCTTTCTGCATTGTTCCTCACCAAAGCAGATTCACCATCGGTCCCCTGGTGTTACTTGGGTTGGAAAGGAAGAACACGAAGA GCCTGGAGTTGCTGATGATAGTTTTCTGCACGTTTCCTCACCGGAGCTGATTCCCATTAGTTCCTCTTGTCGTACCTGGGAAGAAAAGGCAGAAGGTGCA CAGCCTGAAGCTCATAAAGGTTCTCTACCTAGGTCCTCACCAGAGCGGCTCCCCCCTGGTTTCTCCTGTGTCTCTTGGGATGAAAAAGAAGAATTATCAG AGGCTGAAAGCCAACACTATGACGGAGATGAAGCTCCAGATGTTTTGACTGTAGACTCTGTCGTAGATATGCAAGAATCAGGGACCAATACTGAAATTCA TGATCCAACAGATCTCAGATTTGAGAATGAGCATGTTCCAGGGCCAAGTTTCACTGCTGCCACCCTGCTTGAAGATGTTGAAAGTGAAACTGACAATTTC ATGGACGCTCTAAATTCAATAGATACAGAATCTGAGAGCGAACTTGATTATCAGACGAAACATGAAGTGAAAGAAGTTGAATGTGCTAACAGGGATAATG AGGGCTTAGCAGTTACTTCAGGTCAGACAAACCATGAAGTGAAACAAGTTGAATGTGCAATTGAGGAACGAAGGACAGCAGATCGGCAGGACGAGGTCTC TGCAGCTACTTCAGGTCATCATCCAAAGCATGATAGCTACTCCTTGCCTGATTTTTCTTCAAACCATGGAATGGCTTCTGATGTACTCATCCCAGTTCCT TCGGTCAGTCCTGATGAGGAACAAACTCATTCTTCCGAGTCATCATCTACTGCTTTCGGTTCTGAATCAGATATACTTGCTTCTACAACTGCGGATGCCC CTGATGCCTCAAAAGTGGAATCTCCTGTTCTTAACCGGTCATCTGTGATTGTAGTTAACGGAGTAAAGGAACCTTTGGCTGGTGCAGTTCTAAAGGATTC TGGGAAGCCTCAAGAATCTTCTGCCGCTGAGTTATCCCAAGTAGATGGACCATCTGCGATTGCAGTTAAAAAAGTCGAGGAACCATTTGCTGATGATATT GTCCTAGCTGATCCCGGAAAGCCTCAAGAATCTTCTATCACAGAGTTCTCCCATTTGGAACCAATCAAGCTCTGGACTAATGGGGGCCTCTTAGGACTTC AACCATCAAGGCCTCCTGATTTCAACGTGTCAAATGCTGGTAGTCAAGGTTCAGAAACAAATACAGTTAAGGTGGTAAACATCCCAATGCCGAGCAACAA CGACGATAATGTTTCCAGCGCTAAAGATTCAATCGATCCTAACTACAGAAGTAGATTCCATCCGTATGACAGAGGATTGAATGCCAATAATCCAGTGACT CCTGGAAATGGATTGCCGCTTGGTTCATTCATCAAGTTTACTACATCCGGAGGAGCCAGTCATGAAAGCGACGGATACCCATCTCAAAATATGTTTGGGC TTGGGCAAAGATTACTTGCTAACGGCTTTGGCAGAAGGATATCACTTCCACCCAGTAGTGAATCTGAGCTGGCTAGTTCATCACCCCAACCTGCCGAGTT GGAGAAAAAGAGTAGGCAGGCCTTGGTTAAATTTCAACCGAGTCAACCAGACGATCTCAACATACAGTTTGGACACGAGCCTTCAGATGCAGACTACCTT ACATCTTCACCACCACTTGAGCACATGAAATTATCTTTCCAACCTACTGCCGGTGTCGAGGCTTCAAAACTGCAGCTGAAATTTCCTGATGGTAACTACT GCAACGAAAGTACTACAGATATGTTTCCATCGTTTCAGTTGGTTCCGGAGGCTACAACTGGACGAAACCATGCAATCTCCGACTCGGATGATGACACATT CTGCAGATCATCTCCTTACTTGTCAGATGATTGTCTTAGCCATCACTCCGATACGGATTCAGATCAGTGGGAAGCTGGTCAGTCCCCCGAAAGCGTCCAT AACAGCGACCACGACGCTTCATGTGCAATCGAATCCGTGAAGCTCGAGGAGATGGAGAGCAATGGCCTTTGTACAAGTCCTGCAGACGAAACTGAACATG CTGATGGTAGTACAGTTTCATCATGCCTCTCTGCTTCGGTACTCGATCTTCCTAGTTTCGACTCTGTCAAGCCGCCTCTTGAGGAAGTAAGACACAAAGA AGATCACGGGTCAAGTCCATTGCCTCCACCTCTCCCCCCAGCTCAATGGCGGATATCAAAAGAATCGAAACCCGTGTCCGAAACGATAGAAAGGAAACCA CAAGCTATACCTGATGCTCCCCAGACTGCGTTCGTTCCGAAACTCGTCGCAACTCCTACAACTCAGCAACCTAAACCAGCTCCAGCCGCTGAAAACCAGG CTCATCCGGTCATCGTTCCATTCACCCCAAAGAGAAAGGATGAACCGAAGTTGAATCGGTGGAAAGAACCTAATCCACCCACAAATGGGAAGGTGATGCA CGAACAAGAAGATTTCTTGCAGCAAATTAGATCAAAGTCATTCTCCCTGAGACCCACTGCACCAGCCAAGACGAAGGTGGCCGGTGCAACTCCAATCGAC ACAGTGACCGAAATCTTGAAGAAGGCCAGTGCAATTCGCCAGGTAGTTGCGAGCGATGTCGATGACGACGATGCATGGAGTGACCCTTGA
AA sequence Show only first row Show all	>Lus10013904 pacid=23170071 polypeptide=Lus10013904 locus=Lus10013904.g ID=Lus10013904.BGIv1.0 annot-version=v1.0 MPLVRFEVRNQYALGHPELYKEADVDDPKAVLDGVAVAGLVGILRQLGDLAEFAAEVFHGLQEQLTTTASRSQKLKLRVQNIEAALPPIEKAILAQNSHI HFAYTAGSEWHPRIRSEQNHFIYNDLPRFIMDSYEECRDPPRFHILDKFDTGGPGSCLKRYSDPTFFRRASGGFKEHDAEKVQRDKKARKIKKKRSLRRK GSSLQNGSISSHSERSQFFQPTVNGRSSSSHTASNIDLPLKSEIGDRSNSIDSGNGSNHIECVFRPSSSAQPEEQKSNGFSSRSFQGDDSRDSGFSEGQS RVAHDSFLHCSSPKQIHHRSPGVTWVEKEECEEPGVADDSFLHCSSPKQIHHRSPGVTWVGKEEHEEPGVADDSFLHVSSPELIPISSSCRTWEEKAEGA QPEAHKGSLPRSSPERLPPGFSCVSWDEKEELSEAESQHYDGDEAPDVLTVDSVVDMQESGTNTEIHDPTDLRFENEHVPGPSFTAATLLEDVESETDNF MDALNSIDTESESELDYQTKHEVKEVECANRDNEGLAVTSGQTNHEVKQVECAIEERRTADRQDEVSAATSGHHPKHDSYSLPDFSSNHGMASDVLIPVP SVSPDEEQTHSSESSSTAFGSESDILASTTADAPDASKVESPVLNRSSVIVVNGVKEPLAGAVLKDSGKPQESSAAELSQVDGPSAIAVKKVEEPFADDI VLADPGKPQESSITEFSHLEPIKLWTNGGLLGLQPSRPPDFNVSNAGSQGSETNTVKVVNIPMPSNNDDNVSSAKDSIDPNYRSRFHPYDRGLNANNPVT PGNGLPLGSFIKFTTSGGASHESDGYPSQNMFGLGQRLLANGFGRRISLPPSSESELASSSPQPAELEKKSRQALVKFQPSQPDDLNIQFGHEPSDADYL TSSPPLEHMKLSFQPTAGVEASKLQLKFPDGNYCNESTTDMFPSFQLVPEATTGRNHAISDSDDDTFCRSSPYLSDDCLSHHSDTDSDQWEAGQSPESVH NSDHDASCAIESVKLEEMESNGLCTSPADETEHADGSTVSSCLSASVLDLPSFDSVKPPLEEVRHKEDHGSSPLPPPLPPAQWRISKESKPVSETIERKP QAIPDAPQTAFVPKLVATPTTQQPKPAPAAENQAHPVIVPFTPKRKDEPKLNRWKEPNPPTNGKVMHEQEDFLQQIRSKSFSLRPTAPAKTKVAGATPID TVTEILKKASAIRQVVASDVDDDDAWSDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34150		ATSCAR1, WAVE1,...	WISKOTT-ALDRICH SYNDROME PROTE...		Lus10013904 [exp]	0	1
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	4.7	0.8777
AT3G01810			unknown protein		Lus10015805 [exp]	12.4	0.8486
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	15.1	0.8471
AT5G42710			unknown protein		Lus10010806 [exp]	18.5	0.8404
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	19.9	0.7567
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	22.6	0.7946
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	26.2	0.8226
AT2G28780			unknown protein		Lus10005903 [exp]	27.1	0.7768
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	27.3	0.8364
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	30.2	0.8119

Compare expression of checked genes

Lus10013904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.