Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030215 [exp] 58 / 2e-10 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1) Lus10013986 [exp] 58 / 2e-10 ND 55 / 7e-08 Lus10004993 [exp] 56 / 6e-10 ND / Lus10002600 [exp] 51 / 6e-08 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10040838 [exp] 50 / 2e-07 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10011965 [exp] 40 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013906 pacid=23170077 polypeptide=Lus10013906 locus=Lus10013906.g ID=Lus10013906.BGIv1.0 annot-version=v1.0 ATGGATGTACTAGAAGCTGATTTGAAAGATGTTGAAGATGATATTGCTGCTATTGGCAAAAGGAAAGAAGAACCGAAGCAGAGACTTGCGTACGAGATGC CGGCAAAGCTTCCTCCTTTATCTGGTAAAGCGATGTACAGCGTTTGGGAACAAGCGGGAACTAAGACGGACGATTTAACCTGTTCGGGGCGAAGATTTGC TGAAGTTGAAGAGGAATACGACGTGTTCCTAAGGGACACGGTCGTGTCCTTTTTTCTGGAAAGTGACCCGAGACTTCCTGTTGGTAAGAACACGTACGTG TTCCCTAAGGAACACGGCGTGTCCTATCTTCAGACGGGTTTTCAAGTTGTTTTCCTTCTTCGATTTGGAAGGGGCGATATAAATAGCCCGAGCAACCCTT TTGACGGGACGGACATTATTCCAGATATATTTTCGAGTTCTTAG
AA sequence Show only first row Show all	>Lus10013906 pacid=23170077 polypeptide=Lus10013906 locus=Lus10013906.g ID=Lus10013906.BGIv1.0 annot-version=v1.0 MDVLEADLKDVEDDIAAIGKRKEEPKQRLAYEMPAKLPPLSGKAMYSVWEQAGTKTDDLTCSGRRFAEVEEEYDVFLRDTVVSFFLESDPRLPVGKNTYV FPKEHGVSYLQTGFQVVFLLRFGRGDINSPSNPFDGTDIIPDIFSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013906 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10035967 [exp]	11.4	0.7904
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	21.2	0.7834
					Lus10004450 [exp]	29.2	0.8273
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10011786 [exp]	33.3	0.8122
AT4G11170			Disease resistance protein (TI...		Lus10009108 [exp]	40.6	0.7434
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	66.4	0.6885
AT5G41590			Protein of unknown function (D...		Lus10028756 [exp]	73.0	0.6895
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10018039 [exp]	111.7	0.7177
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10015986 [exp]	116.1	0.7020
					Lus10019815 [exp]	136.4	0.7010

Compare expression of checked genes

Lus10013906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.