Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013986 [exp] 516 / 0 ND 55 / 7e-08 Lus10013987 [exp] 474 / 2e-161 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10040838 [exp] 463 / 1e-160 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10004929 [exp] 452 / 8e-159 ND / Lus10007302 [exp] 444 / 6e-155 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10007303 [exp] 429 / 1e-150 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10003349 [exp] 420 / 3e-142 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040816 [exp] 286 / 2e-92 ND / Lus10035796 [exp] 225 / 6e-69 ND 45 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 52 / 4e-07 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.005G043500 [exp] 45 / 7e-05 AT5G07610 135 / 7e-36 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013907 pacid=23170072 polypeptide=Lus10013907 locus=Lus10013907.g ID=Lus10013907.BGIv1.0 annot-version=v1.0 ATGTTACCCGCTGCAAGGTTAGTTTGTGAACCCCGGAATTTTAATAAGCTTGATCTAGGTGGTGGAGATGACCAAGAAGCATTTGTTTATTCTGAGTATC GCTTCCGTGTGGTTTGTATTTATCAAGTCCCTCTACCAATCCCTGCTATAAAGCTAGATGTGTTTTGTTCCGAGTCTGGAGAATGGACTAAGGAAGCTCT TGTCTGTGATGATCATGTTAGAACTGGTTCGAAAAGTGTAGTTTCGTGTAATGGGGAGTTGTTTTGGAAGTATATTGAACGGCATGGTGACCCGTTGAAG GCGTTTCTGGCTGTGTTTAATCCTTTCCGCCTCCATATGCCTCCCACTTCCATTGATGTTTCTGCATTCCTTGTGTATCCACATTGGTTTATTTCCGCCT CACAAGGGGTGTTGCACGTAATAGCAATAGAAAATCGAAGGGTACCTGTTCGTTCAAGGATCTGGAGACTCAAAGAAGACGGTAAATCTTGGAGGAAACA ATGTGAGGGGTTGATGAACGAGACATCAAAGTGTTGTAACTATGTAGTTGAGGGCTGTTATAGACCGTTTCTGCATCCACATAAGCCAGAAATTGTCTTC TTCAATCCACTTCGTTCTGAGGAAAAGAATGCTTTATTGTGCTGCGATTTGAGAACAGAAGAGCTAGAGGTCTTCGCCAAAGTAGAAGAGAAACCTGATG TCTGTCGCCTTCAGGTGTTCCAGCCAAGGGTTTCTTGCTGGGCTACTCCAATTCCAAGGTATGAGGAGTTGCGATGCATGCACGATGGAAGCTACAGCTT TTGGGTTCAGAGCAGCAGTGAAGCAAAAACACACTCCCTCCCTGCCTCCCTCAATATTTGCTGGACAGAAGACCTGAAGCATCGACTTTTGTGTGAAACG CTGGCGAAGCTTCCTTATCCTCCAGTCTCTATAAAAAGTGTCTGTACTACGAACATGGTGGTTCCAAGTAGGAAGCGCAAACTCGGTGGGATGGCTACAA CAGAAAAGAAGCAGCCTCGTTTTGCTGATGACAAGGAAGCTGATTTCAAAGATGTTGCATCCTATGTGGCCGCAGTTGGCGAACCGAAAGAACTGGAGCA GGGACTTTTGTGTGAAACGTCGGCAGAGCTTCCTCATCCTCTAGCGACGGGAAGGCTTGATCTGTGA
AA sequence Show only first row Show all	>Lus10013907 pacid=23170072 polypeptide=Lus10013907 locus=Lus10013907.g ID=Lus10013907.BGIv1.0 annot-version=v1.0 MLPAARLVCEPRNFNKLDLGGGDDQEAFVYSEYRFRVVCIYQVPLPIPAIKLDVFCSESGEWTKEALVCDDHVRTGSKSVVSCNGELFWKYIERHGDPLK AFLAVFNPFRLHMPPTSIDVSAFLVYPHWFISASQGVLHVIAIENRRVPVRSRIWRLKEDGKSWRKQCEGLMNETSKCCNYVVEGCYRPFLHPHKPEIVF FNPLRSEEKNALLCCDLRTEELEVFAKVEEKPDVCRLQVFQPRVSCWATPIPRYEELRCMHDGSYSFWVQSSSEAKTHSLPASLNICWTEDLKHRLLCET LAKLPYPPVSIKSVCTTNMVVPSRKRKLGGMATTEKKQPRFADDKEADFKDVASYVAAVGEPKELEQGLLCETSAELPHPLATGRLDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013907 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	7.4	0.8858
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	10.2	0.8242
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	13.3	0.8716
AT4G10930			unknown protein		Lus10032402 [exp]	14.8	0.8371
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	15.0	0.8652
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	17.1	0.8647
AT1G67170			unknown protein		Lus10035371 [exp]	17.3	0.8010
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	17.5	0.8599
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10040797 [exp]	17.7	0.8325
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	17.9	0.8678

Compare expression of checked genes

Lus10013907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.