Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42590 400 / 2e-139 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G26480 387 / 1e-134 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 368 / 3e-127 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 365 / 3e-126 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT5G38480 346 / 2e-118 RCI1, GRF3 general regulatory factor 3 (.1.2) AT4G09000 341 / 2e-116 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G78300 340 / 3e-116 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 340 / 5e-116 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G65430 338 / 2e-115 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT3G02520 337 / 6e-115 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001894 [exp] 516 / 0 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 401 / 6e-140 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 397 / 5e-138 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 402 / 2e-137 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 389 / 9e-135 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 377 / 2e-130 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 372 / 2e-128 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 370 / 8e-128 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10036471 [exp] 354 / 1e-121 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G392200 [exp] 406 / 4e-142 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 404 / 3e-141 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 389 / 1e-135 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.008G095000 [exp] 385 / 5e-134 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.005G164500 [exp] 379 / 1e-131 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.010G159300 [exp] 377 / 1e-130 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.004G101700 [exp] 350 / 5e-120 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 343 / 3e-117 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 342 / 6e-117 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 341 / 1e-116 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10013908 pacid=23170037 polypeptide=Lus10013908 locus=Lus10013908.g ID=Lus10013908.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAACTGAACGAGACACCTTCGTCTACACCGCCAAGCTCGCCGAGCAAGCTGAGCGCTATGAAGAAATGGTGGATGCGATGAAGAAGTTAG CGGGGCTTAACGTGGAGCTGACCATAGAGGAGAGGAATCTGCTCTCTGTTGGTTACAAGAATGTGATCGGTGCTCGACGAGCATCGTGGAGGATACTGTC GTCCATTGAACAGAAGGAGGAGAGCAGAGGGAATGAGCACAATGTGAAGCAGATTAGAGGCTATAGGCAGAAGGTTGAGTCGGAGCTGTCTGATATTTGT AACGATGTGATGACTGTGATTGATGATCATCTGATCCCTTCTTGCTCCGGTGCAGAATCCACCGTGTTCTTCTACAAAATGAAAGGGGATTACTATCGGT ATGAAGCCGAGTTCAAGTCAGGTGATGAGAGGAAAGAGGTTGCTGATGAGTCCATGAAGGCATACCAGAATCTTAAATTGGTCCTTCATCTCCATTTGCA GACGGCATCTAGCGCTGCAGAAGCTGAACTACCTCCTACACACCCAATAAAGCTTGGATTGGCCTTGAACTACTCGGTCTTCTACTACGAAATTTTGAAC TCTCCTGAAAAGGCTTGCCACCTTGCGAAGCAAGCTTTTGATGAAGCCATCCATGAACTGGACAATCTGAACGAGGAATCTTACAAAGATAGCACATTGA TCATGCAGCTCTTAAGGGATAATCTCACTTTGTGGACTTCTGACCTCACTGAGGATGCTGATGAAATTCAAAAGGTTGAAAAGCCTGGTGCAGGTGAAGA CGCAGAGACCACCAGCATCATCCTAGCATCAGCAGCACTCTGCTTCTTGACCCTCCTCGGGTCCGCCAATGGCGATGCCTTCAACGTCGAGGGCAAGGTC TACTGCGACACCTGCCGCACCCAGTTCATCACCCGAATCTCCGATTTCATGAAAGATGCGGTGGTGCGTTTGGAGTGCAAAGACCGGGAGGGAGGATCGG TAACCTTTAGTGAAACGGCCATCACAGATGAGCACGGTGTGTTCCACATCCCAGTGACAGGAGACCACGAGGAAGAAATCTGCGAGATCAACTTGATCAA GTCGCCAAGGCCCGATTGTTCGGAGATCCCGAAGCAAGAACACCCGAACGACGAAACTGCGAGGATCAGCATCACAAAGCACAATGGGATGACCACTGGG GAGCGTCAGGCGAACCCGTTGGGGTTCATGGTGGCCAAGCCTAAGCCAGAGTGCCTTGAGGTGCTTAAGGAACTCGGCATCCCAGCTCAGGGATTCCCTG CACCATAG
AA sequence Show only first row Show all	>Lus10013908 pacid=23170037 polypeptide=Lus10013908 locus=Lus10013908.g ID=Lus10013908.BGIv1.0 annot-version=v1.0 MASSTERDTFVYTAKLAEQAERYEEMVDAMKKLAGLNVELTIEERNLLSVGYKNVIGARRASWRILSSIEQKEESRGNEHNVKQIRGYRQKVESELSDIC NDVMTVIDDHLIPSCSGAESTVFFYKMKGDYYRYEAEFKSGDERKEVADESMKAYQNLKLVLHLHLQTASSAAEAELPPTHPIKLGLALNYSVFYYEILN SPEKACHLAKQAFDEAIHELDNLNEESYKDSTLIMQLLRDNLTLWTSDLTEDADEIQKVEKPGAGEDAETTSIILASAALCFLTLLGSANGDAFNVEGKV YCDTCRTQFITRISDFMKDAVVRLECKDREGGSVTFSETAITDEHGVFHIPVTGDHEEEICEINLIKSPRPDCSEIPKQEHPNDETARISITKHNGMTTG ERQANPLGFMVAKPKPECLEVLKELGIPAQGFPAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10013908 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	43.3	0.8091
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10032400 [exp]	44.2	0.8162
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	104.5	0.7587
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Lus10025238 [exp]	126.4	0.7922
					Lus10007009 [exp]	193.6	0.7693
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10009115 [exp]	289.4	0.7541

Compare expression of checked genes

Lus10013908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.