Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29120 555 / 0 Hydrolase-like protein family (.1.2.3.4.5) AT4G25770 288 / 4e-93 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 260 / 4e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 260 / 2e-82 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001893 [exp] 745 / 0 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10032496 [exp] 258 / 2e-82 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 259 / 3e-82 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 251 / 1e-78 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 245 / 2e-77 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065700 [exp] 592 / 0 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.018G096035 [exp] 262 / 3e-83 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 254 / 7e-81 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 249 / 9e-79 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 243 / 1e-75 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10013909 pacid=23170075 polypeptide=Lus10013909 locus=Lus10013909.g ID=Lus10013909.BGIv1.0 annot-version=v1.0 ATGGCCGCCCCTTTTGGTTGTGGCTACTATTCTCCTTCTCCTTCCTTCTCTCGTCACAATTCTTCCCGGAATGGCGGAGCAGCTTCTTCTTCTTCTTCTT CTTCGCCTATAGCTTCCTCCTCCTCGTCCTGTTCGTGCTCTTCCTCTCCCGGACTCAGCTTCTCCTCTTCCGGTGTAAGTAGTAATTGGAAATATCAAGG ATTTAGAGCCCACGCTATGGATATGACCACTCAAGGAAATTTTGATTCCTCCAGTCTACTGACCAATGGCAAAAATGAGCCCGATCATCTTCTTGTCCTT GTTCATGGCATCCTTGCCAGCCCAGGTGATTGGAATTACGTGCAAGCAGAATTGAAAAAGCGCCTTGGGGAAAACTATCTGTTATATGCAAGTTCGTCAA ACACTTACACCAAAACTTTCAGTGGCATCGATGGGGCTGGAAAGAGACTAGCAGAGGAAGTCACACAAGTTGTGAGCAAGACACAGAGTTTGAAAAGGAT ATCCTTTTTAGCTCATTCCCTCGGTGGTTTGTTTGCAAGATACGCGATCGCTGTCCTATATTCAGAAAATGATGAGAATCCATCGAAACTTAACGATGAT ATCGAGACAGGCTCTTCAAGAAGCGGCGGTAGAATTGCCGGACTGGATCCTGTCAATTTTATCACTTTAGCAACTCCACATCTTGGCGTCAGAGGTAGAA ACCAGCTGCCATTTCTCTTGGGAATTCCCTTCTTAGAGAAGCTCGTTCCACCAATTGCTCATATTTTCGTTGGATACACCGGTAAGCAGTTGTTTCTAAC CGATGGCCAACCGAACAAACCACCTCTTCTTCTAAGAATGACAGCAGATTGTGAAGAAGGAAAGTTTATATCTGCACTCGGATCATTCAAGTGTCGCACT GTGTATGCAAACGTATCGTATGACCTTTCCTTAACGATTAAACCAGACATGGTGGGCTGGCGTACATCCTCCATTAGAAGGGAGACAGAACTTGTGAACC CCCCTCGGCGATCGTTGGATGGTTACAAACACGTTGTAGATGTCGAATACTGCCCGCCAGTATCGACAGACGGCCCTCATTTCCCTCCTGAAGCAGCAAA GGCCAAAGCCGCTGCTCAAAATGAACCCAGCGCCAAAAACACAGTAGAGTACCATGACATCATGGAAGAGGAAATGATACACGGCCTGCAGCGGCTGGGA TGGAAGAAGATTGACGTCAGCTTTCATTCTGCATTCTGGCCTTTCTTCGCCCACAACAACATACACGTGAAAAACGAATGGTTCCATAACGCTGGCGCGG GAGTTATAGCTCATGTTGCGGATACCCTGAAGCAGCAAGAACCCTCCTCGTACTTGACTGCTAGCTTGTAG
AA sequence Show only first row Show all	>Lus10013909 pacid=23170075 polypeptide=Lus10013909 locus=Lus10013909.g ID=Lus10013909.BGIv1.0 annot-version=v1.0 MAAPFGCGYYSPSPSFSRHNSSRNGGAASSSSSSSPIASSSSSCSCSSSPGLSFSSSGVSSNWKYQGFRAHAMDMTTQGNFDSSSLLTNGKNEPDHLLVL VHGILASPGDWNYVQAELKKRLGENYLLYASSSNTYTKTFSGIDGAGKRLAEEVTQVVSKTQSLKRISFLAHSLGGLFARYAIAVLYSENDENPSKLNDD IETGSSRSGGRIAGLDPVNFITLATPHLGVRGRNQLPFLLGIPFLEKLVPPIAHIFVGYTGKQLFLTDGQPNKPPLLLRMTADCEEGKFISALGSFKCRT VYANVSYDLSLTIKPDMVGWRTSSIRRETELVNPPRRSLDGYKHVVDVEYCPPVSTDGPHFPPEAAKAKAAAQNEPSAKNTVEYHDIMEEEMIHGLQRLG WKKIDVSFHSAFWPFFAHNNIHVKNEWFHNAGAGVIAHVADTLKQQEPSSYLTASL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	0	1
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	1.0	0.8610
AT5G41620			unknown protein		Lus10028746 [exp]	4.2	0.7821
AT5G58610			PHD finger transcription facto...		Lus10025387 [exp]	4.2	0.8229
AT4G17740			Peptidase S41 family protein (...		Lus10023704 [exp]	5.3	0.7440
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	8.0	0.8087
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	10.6	0.8329
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10028853 [exp]	13.4	0.8014
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	15.2	0.7821
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	15.5	0.7943
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	16.2	0.7795

Compare expression of checked genes

Lus10013909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.