Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 620 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 592 / 0 ARK3 receptor kinase 3 (.1) AT1G11410 589 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 571 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 567 / 0 ARK2 receptor kinase 2 (.1) AT1G61610 514 / 6e-171 S-locus lectin protein kinase family protein (.1) AT1G11330 498 / 9e-165 S-locus lectin protein kinase family protein (.1.2) AT4G21390 491 / 8e-162 B120 S-locus lectin protein kinase family protein (.1) AT1G61380 489 / 2e-161 SD1-29 S-domain-1 29 (.1) AT1G11280 485 / 8e-160 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007610 [exp] 1150 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 1080 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005053 [exp] 959 / 0 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 822 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 817 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013246 [exp] 808 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 807 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 806 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 803 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 806 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 788 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 787 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 783 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 768 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 766 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 679 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 664 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 659 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 620 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10013910 pacid=23170065 polypeptide=Lus10013910 locus=Lus10013910.g ID=Lus10013910.BGIv1.0 annot-version=v1.0 ATGAAAATTGTAAGCTTTATTCTGATTTCTCTGCTTCTCCTCATCCATGAAGCAAGAAGATCCACCTCACTTGACACAGTTACTGCAGACCATTCCATCA CCGATGGCAACTTGGTAATCTCCAAAACTGGTAATTTCGCGTTGGGATTCTTCAGTCCCGGAATTTCCACCTCTAGATATCTCGGCATTTGGTATAACGA GATACCTGAACAAACCGTGGTGTGGGTTGCCAATAGGGACACTCCCATCACTGGAACTTCCGGGGTTCTTTTGATCAGTCGAGGAAAAAGTTGCAATCTT TTTCTGTATGATAGTAGTAGCAGCAGGCTTCCAGTGTGGTCTGCTAATGTTTCGTCCGGGTTGAATGGCCCTTGCAAGGCCAAGCTATTGGATTCAGGAA ATTTTGTATTGATGGGTAGGAGGAATGCTGTGTGGGAAAGCTTTGACAATCCTACAGACACCTCGCTACCCAGCATGAAAGTTGGTTTGAATCGAAGAAC GGGAGTAAGTCGCTTCTTGACATCTTGGAGATCAGAGGATGACCCTGGCACTGGAAGCTTTACATACAAGCTAAACCCAAGTGGCTCGCCGCAGTTCTTT GTGTACAAAGGTATGGACCCTATTTGGAGGAGCGTTCCTTGGCCATGGGATACTCACCTTGGTTATGCGAATAACACTTTTGAAATCACTGAAGATGGAA TTTACTATACAAATAGATTCGAAAATGCTTCGGTTCACGGGAGGGTGGTGGTTCTTCCTTCGGGTTTGTTGAACCTAATGATATGGGATGGAGATGCTGG TCATTGGAAGGTAATTTACACTTCACCAAAGCACGAGTGTGATTTCTATGCAAGTTGTGGTCCTTTCACTAAGTGTTATTCCAGCCTTTTGTTCCCCTTT GAATGTGACTGTTTACCTGGGTATGAACCGAGATATCCTCGAAAGTGGGAATCGAGAGATCGGTCAGCTGGGTGTGTAAGAAAGCGATCGGAATCGTCTT CTATCTGTGATGGTGGAGAAGGGTTTGTGAGAATGGAGAAAGTTAAGATACCTGATACTTCGAAAGCAGTATGGATGGATGAAGCGGGGATGAGTAAATC GAAATGCGAAGATGAATGCAGGAATAACTGTTCGTGCTCTGCTTATGCTACTATCGATATTTATGGGAAAGGGACTTGTTGTTGGACATGGTACGGAGAT TTGATGGATACAGTGCACTTGGCGGTCAATGCTTATGATCTATATGTTCGTGTTGATGCTATTGAATTAGCTGATTATCTGAAGCAATCAAATGAGTTTC CAGAGTTGAGGTTGAAGTTGAGTATTGTAGTACCATCCTTTGTCTCAGTGTGGCTTGTCATTATCTTGTTTGCCTATCTATGGCTGAGGAAGTGGAAGAA CAGGAGAGTGAAGAACAGACGTATCCGGAATATGTTTAATTCAACTGACGGTTCAAATCACTTTGAAGATTCTTCACCTTCAAAGCGAAATACCATCTAT CCCGAATTACAATTTTTCAGCCTAGGCACCATGCATGAAGCCACTGAAAGCTTTTCTCCGGTGAACAAACTCGGACAAGGCGGGTTTGGTTCAGTGTACA AGGGGAAACTGTCCAATGGGGAAGAGATTGCTGTGAAACGACTGTCGAAAAATCCGAGGGAGGGGTTAGAACAGTTTAAGAATGAAGTACTGTTGATTGC AAAGCTGCAACACAGGAACCTTGAGGAAAGATCTTTCTTAGATTGGAAGAAACGGTTCAATATAATTGTGGGTGTCGCTCGTGGGGTCTTGTATCTTCAT CAAGATTCGAGGTTCAAAATAGTCCATAGAGATCTGAAACCGAGCAATATTCTCCTGGATGCTGAGCTGAATCCCAAAATCTCCGATTTCGGTATGGCTA GAATGCTGGAAAGCAACCAAATTCAAGGGAAGACAACCAGAGTCTGTGGAACTTATGGCTACATGTCACCCGAGTATGTCATCTTTGGAAGGTATTCAGC AAAATCAGATGTCTTCAGCTTCGGTGTAATATTGCTGGAAACCGTCACTAGGAAGAAGATCAATTGGTTCTTTCTGCAAGATCCTTCATTGAGCTTGATC GGTCATGTGTGGGAGCTATGGAGGACAGGCCGAATGGCGGAGATGATCGATGATTCATCGTCAATGTCGCTAAAAGAATCGAACGAAGCTCTGAGATGCA TCCAGATCGGCCTGCTGTGCACGGAACAAAATGCAGCAGACCGTCCCGATATGCTGGCAGTCGTTCTTATGTTGAACAGCGAAACGACTCCAATTCCGTC CCCACAAAGCCCTGCATTCGTTTGTGTGAAGTCCAAGCTACCATTGCCCCATGAGCAAGCTTGCTCCATTAACGAGATGACTTTCTCGATGATTTCGAGT CGCTGA
AA sequence Show only first row Show all	>Lus10013910 pacid=23170065 polypeptide=Lus10013910 locus=Lus10013910.g ID=Lus10013910.BGIv1.0 annot-version=v1.0 MKIVSFILISLLLLIHEARRSTSLDTVTADHSITDGNLVISKTGNFALGFFSPGISTSRYLGIWYNEIPEQTVVWVANRDTPITGTSGVLLISRGKSCNL FLYDSSSSRLPVWSANVSSGLNGPCKAKLLDSGNFVLMGRRNAVWESFDNPTDTSLPSMKVGLNRRTGVSRFLTSWRSEDDPGTGSFTYKLNPSGSPQFF VYKGMDPIWRSVPWPWDTHLGYANNTFEITEDGIYYTNRFENASVHGRVVVLPSGLLNLMIWDGDAGHWKVIYTSPKHECDFYASCGPFTKCYSSLLFPF ECDCLPGYEPRYPRKWESRDRSAGCVRKRSESSSICDGGEGFVRMEKVKIPDTSKAVWMDEAGMSKSKCEDECRNNCSCSAYATIDIYGKGTCCWTWYGD LMDTVHLAVNAYDLYVRVDAIELADYLKQSNEFPELRLKLSIVVPSFVSVWLVIILFAYLWLRKWKNRRVKNRRIRNMFNSTDGSNHFEDSSPSKRNTIY PELQFFSLGTMHEATESFSPVNKLGQGGFGSVYKGKLSNGEEIAVKRLSKNPREGLEQFKNEVLLIAKLQHRNLEERSFLDWKKRFNIIVGVARGVLYLH QDSRFKIVHRDLKPSNILLDAELNPKISDFGMARMLESNQIQGKTTRVCGTYGYMSPEYVIFGRYSAKSDVFSFGVILLETVTRKKINWFFLQDPSLSLI GHVWELWRTGRMAEMIDDSSSMSLKESNEALRCIQIGLLCTEQNAADRPDMLAVVLMLNSETTPIPSPQSPAFVCVKSKLPLPHEQACSINEMTFSMISS R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	0	1
AT4G21920			unknown protein		Lus10006774 [exp]	1.0	0.9512
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	3.3	0.9248
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	5.1	0.9225
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	6.8	0.9480
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	8.5	0.9185
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10021064 [exp]	10.0	0.9015
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	11.4	0.9417
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	11.5	0.9150
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	11.6	0.9136
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	13.4	0.9082

Compare expression of checked genes

Lus10013910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.