Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56891 89 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 89 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 80 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 71 / 1e-15 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 72 / 4e-15 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 67 / 2e-14 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 67 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 65 / 1e-13 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT3G56240 62 / 6e-13 ATX1, CCH copper chaperone (.1) AT1G23000 64 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001892 [exp] 215 / 3e-72 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 86 / 2e-21 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 84 / 3e-20 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10010147 [exp] 84 / 3e-20 AT2G18196 165 / 5e-52 Heavy metal transport/detoxification superfamily protein (.1) Lus10008284 [exp] 83 / 4e-20 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10027470 [exp] 76 / 1e-17 AT3G48970 167 / 2e-54 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 76 / 1e-17 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 76 / 1e-17 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 76 / 1e-17 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065600 [exp] 118 / 4e-34 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 97 / 8e-26 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 95 / 3e-25 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 95 / 3e-25 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 95 / 4e-25 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.001G452400 [exp] 86 / 3e-21 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G149500 [exp] 84 / 2e-20 AT2G18196 257 / 9e-89 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 80 / 2e-19 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.007G087300 [exp] 79 / 6e-19 AT4G39700 215 / 9e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.018G150200 [exp] 72 / 9e-17 AT1G06330 73 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10013911 pacid=23170054 polypeptide=Lus10013911 locus=Lus10013911.g ID=Lus10013911.BGIv1.0 annot-version=v1.0 ATGCCGATAACCGAGCTTAGCGTCCACATGTGTTGCCACGGCTGCGAGCTGAAGATCAAGAAGGCACTCCGAAGGCTAGACGGAGTTAACGAGATAGACA TAGACATGTCAACGCAAAAGGTGACGGTGATGGGCTACGTTGACCAAGAAACCGTCCTCAAAGCCGTTAGGAAGACCGGCAGAAGAGCCGAGCTCTGGCC GGACGGTTACAACCATTCAGAGTACGCGAGCTTCAACCAACAGAACTACAATTACCTACAGCAGCCGGCTTATCTCTTGCAAAACCAGCCGCCGCCTCAG CAGCCAGCGCCGTCAGCGCCGCCATATGAGGATGTTGTAGATCATGATGAAGATCGGTACTACGTCGTTGACTCTGATCATCAACAAGGTCGTGTTGGGT ATATGGCTTCTTATGATGATGAGGATAGCTACTATAGGGATTATCAACGACGGCCGGTGTTGTACTCGTTCGCCGACCAGCAGCCCGCGGCCGCCATGTT TAGTGATGAGAATCCGCATGCTTGTTCCATGATGTGA
AA sequence Show only first row Show all	>Lus10013911 pacid=23170054 polypeptide=Lus10013911 locus=Lus10013911.g ID=Lus10013911.BGIv1.0 annot-version=v1.0 MPITELSVHMCCHGCELKIKKALRRLDGVNEIDIDMSTQKVTVMGYVDQETVLKAVRKTGRRAELWPDGYNHSEYASFNQQNYNYLQQPAYLLQNQPPPQ QPAPSAPPYEDVVDHDEDRYYVVDSDHQQGRVGYMASYDDEDSYYRDYQRRPVLYSFADQQPAAAMFSDENPHACSMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	3.5	0.8419
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	7.1	0.8816
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	9.6	0.8496
					Lus10022970 [exp]	14.1	0.8126
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	16.5	0.8548
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	21.5	0.8375
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	22.6	0.7838
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	29.7	0.8398
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	29.8	0.8393
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10033268 [exp]	33.7	0.8257

Compare expression of checked genes

Lus10013911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.