Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46230 91 / 3e-24 Protein of unknown function, DUF538 (.1) AT4G24130 81 / 3e-20 Protein of unknown function, DUF538 (.1) AT1G56580 80 / 9e-20 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 77 / 2e-18 Protein of unknown function, DUF538 (.1) AT1G30020 71 / 3e-16 Protein of unknown function, DUF538 (.1) AT5G49600 66 / 4e-14 Protein of unknown function, DUF538 (.1) AT3G07470 44 / 5e-06 Protein of unknown function, DUF538 (.1) AT5G19860 41 / 6e-05 Protein of unknown function, DUF538 (.1) AT5G16380 38 / 0.0008 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001891 [exp] 212 / 6e-72 AT5G46230 120 / 8e-36 Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 151 / 4e-48 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 137 / 2e-42 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10033613 [exp] 92 / 3e-25 AT1G56580 63 / 4e-14 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 86 / 4e-22 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 86 / 4e-22 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 85 / 1e-21 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 79 / 2e-19 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10000616 [exp] 78 / 2e-19 AT5G46230 86 / 1e-22 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056700 [exp] 169 / 4e-55 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 155 / 9e-50 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 137 / 9e-43 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 89 / 7e-23 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 88 / 8e-23 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 88 / 8e-23 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 87 / 2e-22 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 85 / 1e-21 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 67 / 2e-14 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 40 / 9e-05 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10013912 pacid=23170083 polypeptide=Lus10013912 locus=Lus10013912.g ID=Lus10013912.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGAAGAAAGGAGCAGTAGTGAAGAACGGCCACGAAGAAGGGCTGAAAGCAGCAATGGCTTTACTACAAGAGTTCGAGCTCCCTCTCGGTC TCCTCCCGCTCGAAGAGGTGCTCGAGGTCGGTTTCGTTAAGGAGACGGGTTACGTGTGGATCCTGCAGAAGAAGAAAGTTGAGCATGTGTTCAAGATGAT CAGCAAGAATGTTAGCTATGACAAGGAGATCACTGGGTTTATCAGCAAGAAGAACATCAAGAAGCTTAAAGGTGTCAAGGCTAAAGAGTTCATGCTGTGG CCTCCTGTTGGTGAGATCATTGTCGGCGAAGCCTCCACTGGCAAGATCCACTTCAAGAGCCTTGCAGGGATTACTAAGGTATTCCCGGTCGAGGCGTTTG CTGCTGGACAGTGA
AA sequence Show only first row Show all	>Lus10013912 pacid=23170083 polypeptide=Lus10013912 locus=Lus10013912.g ID=Lus10013912.BGIv1.0 annot-version=v1.0 MADQKKGAVVKNGHEEGLKAAMALLQEFELPLGLLPLEEVLEVGFVKETGYVWILQKKKVEHVFKMISKNVSYDKEITGFISKKNIKKLKGVKAKEFMLW PPVGEIIVGEASTGKIHFKSLAGITKVFPVEAFAAGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46230			Protein of unknown function, D...		Lus10013912 [exp]	0	1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	4.7	0.7634
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	8.5	0.7403
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	10.2	0.7398
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	12.7	0.7393
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	13.2	0.7395
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	13.2	0.7393
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	14.1	0.7461
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	14.7	0.7369
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	19.7	0.7302
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	20.9	0.6788

Compare expression of checked genes

Lus10013912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.