Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 167 / 2e-54 dual specificity protein phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001888 [exp] 222 / 5e-76 AT4G18593 149 / 5e-47 dual specificity protein phosphatase-related (.1) Lus10013914 [exp] 220 / 3e-75 AT4G18593 148 / 1e-46 dual specificity protein phosphatase-related (.1) Lus10018112 [exp] 139 / 1e-40 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Lus10022402 [exp] 137 / 7e-40 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) Lus10001890 [exp] 0 / 1 ND 62 / 6e-14
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056600 [exp] 180 / 2e-59 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 136 / 2e-39 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 133 / 2e-38 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013913 pacid=23170030 polypeptide=Lus10013913 locus=Lus10013913.g ID=Lus10013913.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGAATTTAAACTCGGCAACTGCAACAGAAACTTTGCATGCAGGCAATGAGACCGTCAGTGAAGCTAGTGATGTCCAGAAACTAGGACTGG TTTACCGCTGCAAAAAGTGTCGAAGAATTGTTGCATCTGATGACAACATAGTTACTCACGAGCGTGGCAAAGGCCAAGAGTCGTTTAAATGGAAGAAGAG AAGCGATGATCCCGTTGGAAAGGCACCCGCCGGGTGCTCCTCCATATTTGTTGAGCCGATGAAGTGGATGGAAACAGTGCGGGAAGGCTTTGTTGGGGAC AAACTCCTCTGCGTCGGATGCAACGGGAGGTTGGGTTCGTTCAACTGGGCTGGAATGCAGTGCAACTGTGGTGCTTGGATTAATCCTGCATTTCAACTTC ACAAAAGCAGATTAGATGAATGCCCCTTATGA
AA sequence Show only first row Show all	>Lus10013913 pacid=23170030 polypeptide=Lus10013913 locus=Lus10013913.g ID=Lus10013913.BGIv1.0 annot-version=v1.0 MATENLNSATATETLHAGNETVSEASDVQKLGLVYRCKKCRRIVASDDNIVTHERGKGQESFKWKKRSDDPVGKAPAGCSSIFVEPMKWMETVREGFVGD KLLCVGCNGRLGSFNWAGMQCNCGAWINPAFQLHKSRLDECPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18593			dual specificity protein phosp...		Lus10013913 [exp]	0	1
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	5.7	0.7392
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	17.0	0.7427
AT3G53540			unknown protein		Lus10025295 [exp]	35.8	0.6901
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	36.2	0.7002
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	47.1	0.7174
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	51.6	0.7023
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	56.5	0.6445
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	57.4	0.6920
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	61.1	0.6593
					Lus10006375 [exp]	65.9	0.6647

Compare expression of checked genes

Lus10013913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.