Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 147 / 2e-46 dual specificity protein phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001888 [exp] 285 / 1e-100 AT4G18593 149 / 5e-47 dual specificity protein phosphatase-related (.1) Lus10013913 [exp] 220 / 3e-75 AT4G18593 169 / 6e-55 dual specificity protein phosphatase-related (.1) Lus10022402 [exp] 125 / 2e-35 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) Lus10018112 [exp] 125 / 3e-35 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Lus10001890 [exp] 55 / 5e-11 ND 62 / 6e-14
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056600 [exp] 166 / 8e-54 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 122 / 3e-34 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 121 / 5e-34 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013914 pacid=23170098 polypeptide=Lus10013914 locus=Lus10013914.g ID=Lus10013914.BGIv1.0 annot-version=v1.0 ATGGCCATCGAGAACTTAAACTCGGCAGCTGAGACAGAAGAAACTGCGCCTGCAGGCAATGAATGTACTGCTCTCCAGACATTCGGACTCGTTTACCGGT GCAAAAAGTGTCGAAAAATCATTGCATACGACGACAACATAGTCACTCACGAGCGCGGTAAGGGCCCGGAGTCGTTTAAATGGAAGAAGAGAAGACATGA TCCTGTAGGAACAGTTCCAGCCGAGTGCTCCTCCATCTTTGTTGAGCCCATGGTCTGGATGCAAACAGGTAAAGGCTATGTTGGGAATAAGCTTCAGTGC GTCGGGTGCAACGCGAGGTTGGGTTCGTTCAACTGGGCCGGAATGCAATGCAACTGCGGTGCTTGGGTTAACCCTGCATTTCAACTTCACAAGAACAGAT TGGATGAATGTCCCTTATGA
AA sequence Show only first row Show all	>Lus10013914 pacid=23170098 polypeptide=Lus10013914 locus=Lus10013914.g ID=Lus10013914.BGIv1.0 annot-version=v1.0 MAIENLNSAAETEETAPAGNECTALQTFGLVYRCKKCRKIIAYDDNIVTHERGKGPESFKWKKRRHDPVGTVPAECSSIFVEPMVWMQTGKGYVGNKLQC VGCNARLGSFNWAGMQCNCGAWVNPAFQLHKNRLDECPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	1.7	0.8898
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	4.9	0.8272
AT1G77270			unknown protein		Lus10042760 [exp]	6.6	0.8047
AT1G34770			unknown protein		Lus10020925 [exp]	7.7	0.8083
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	8.0	0.8302
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	11.3	0.8217
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	11.4	0.7649
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	11.7	0.8166
					Lus10000543 [exp]	13.3	0.7444
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	15.7	0.8159

Compare expression of checked genes

Lus10013914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.