Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 599 / 0 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 256 / 7e-79 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 158 / 3e-42 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 62 / 7e-10 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025415 [exp] 662 / 0 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 660 / 0 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 658 / 0 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 632 / 0 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 627 / 0 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 625 / 0 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 566 / 0 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10001887 [exp] 476 / 6e-167 AT4G25650 275 / 4e-88 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10042159 [exp] 399 / 3e-126 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005900 [exp] 630 / 0 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 601 / 0 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 597 / 0 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 590 / 0 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 590 / 0 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 578 / 0 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 243 / 7e-74 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 194 / 1e-55 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 175 / 3e-48 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.018G015700 [exp] 162 / 9e-44 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10013915 pacid=23170108 polypeptide=Lus10013915 locus=Lus10013915.g ID=Lus10013915.BGIv1.0 annot-version=v1.0 ATGCCTCTTACTCAAATACCCACTTCACCTTGTCGTGCAAAACTCATTCGCACGCCATCAAGATTCAATCTTTTCCGCTCCTCTGTTTCGGCGAAACAAC CACTTCAGCCTGACGTGACCTCCACTGCCGCCTCCGCCGGTGTCGTCGTCGAGAAGAAGTTCGACTGGTACTCGCAGTGGTACCCGGTGATGCCGGTGAG TGACTTGGACAAGAGGATGTCGCACGGGAAGAAAGTGTTGGGGATGGATGTGGTGGTGTGGTGGGACCGGAGCGAGAATGCATGGAAGGTGTTCGACGAT ATGTGTCCTCACCGTTTGGCTCCGTTATCGGAAGGAAGGATCGATCAGTCGGGGAGGCTGCAGTGTGTTTATCATGGATGGTGCTTTGACGGCTCCGGCA GCTGCCAGCTCATTCCTCAATCGCCTCCTGATGGCCCTCCTGTTCATGCCAACAAAAGGGCTTGTGTTGCAGTGTATCCAACCATAGTACACCATGATAT TGTCTGGTTTTGGTCGAATTCCGATCCTAGGTACAAAGACATTTTTGAAACCAGAAAGCCTCCGTTTATTCATGAGTTGTATGATCCTTCCTTCACTACG ATAAACGGGAGTCGGGATCTTCCTTATGGGTATGAAGTGTTGATGGAGAACCTTATGGATCCTGCTCATCTTCCCTATGCACATTATAGTCTGATGGAAA TGCAGCCTCCAGAGGTAAAGCGTGACAAAGAAGGTGGTAAACCACTTAATTTCACCGTGAAGAAGCTAGACATAGATGGGTTCGATGCAGAGCTCGATTT CGGCCATAGTAAATTCGCTCCACCCTGCATCTTTTCCATCCATGCCGAACTACCTTCTGCTACCAATAAGCCATCGAGGACAGCCGCGGTTTTCATTTGT GTTCCAGTTAGTCCAGGGAACAGCAGACTAATCTGGTCTTTTCCGAGGAACTTTAGTATTTGGGTTGGTAAAGTTGTTCCTAGATGGATGAATCATATGG TTACGAACCTGCTTCTCGATTCGGATTTATATCTCCTTCATGCAGAGGAGCACAAGATTATGGAAATTGGCCCGGAGAATTGGCACAAGTTGTGTTTCGT GCCAACTAAATCGGACGCTTTAGTGGTCGGTTTTCGAAGATGGCTCAACAAATACGCCGGTGGTGAAGTCGACTGGAGAGGCAAGTATAGTGCTGGCGAT CTTCCTCCAACTGCCCCAAAAGAACAACTTATGGATAGGTACTGGACTCATGTAGCGAACTGCAGCAGTTGCCGTGAAGCTTATAAAAATCTCAATGCTC TCGAGACGGTTCTCCAAGTAGTTTCTGTTGGATTAATCGGGATCGTTGTTGCAACCAGGCAAGGTACATTGTCAACAGGAGCAAGAACCGGACTGGGAAT ATTGGCAACTATTTCTTTTGCGGTTTCGAGATGGTTGGCCTTTTTCGTCTACAACAACTTCCGTTACCATGGCTACGACCACGGCCTTCCTGAAAAAGTC TTGTTATTCGTTCGAATATGGAAATTAGGGCTTTCTTTTTAG
AA sequence Show only first row Show all	>Lus10013915 pacid=23170108 polypeptide=Lus10013915 locus=Lus10013915.g ID=Lus10013915.BGIv1.0 annot-version=v1.0 MPLTQIPTSPCRAKLIRTPSRFNLFRSSVSAKQPLQPDVTSTAASAGVVVEKKFDWYSQWYPVMPVSDLDKRMSHGKKVLGMDVVVWWDRSENAWKVFDD MCPHRLAPLSEGRIDQSGRLQCVYHGWCFDGSGSCQLIPQSPPDGPPVHANKRACVAVYPTIVHHDIVWFWSNSDPRYKDIFETRKPPFIHELYDPSFTT INGSRDLPYGYEVLMENLMDPAHLPYAHYSLMEMQPPEVKRDKEGGKPLNFTVKKLDIDGFDAELDFGHSKFAPPCIFSIHAELPSATNKPSRTAAVFIC VPVSPGNSRLIWSFPRNFSIWVGKVVPRWMNHMVTNLLLDSDLYLLHAEEHKIMEIGPENWHKLCFVPTKSDALVVGFRRWLNKYAGGEVDWRGKYSAGD LPPTAPKEQLMDRYWTHVANCSSCREAYKNLNALETVLQVVSVGLIGIVVATRQGTLSTGARTGLGILATISFAVSRWLAFFVYNNFRYHGYDHGLPEKV LLFVRIWKLGLSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	0	1
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	2.0	0.9607
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	2.0	0.9262
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	5.9	0.9219
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	6.3	0.9227
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	12.4	0.8917
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	13.1	0.9234
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	15.5	0.9092
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	16.5	0.9164
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	20.1	0.9079
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	22.0	0.9170

Compare expression of checked genes

Lus10013915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.