Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 255 / 1e-79 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 103 / 9e-24 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 72 / 2e-13 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 43 / 0.0004 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001887 [exp] 485 / 4e-172 AT4G25650 275 / 4e-88 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 355 / 1e-118 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 301 / 3e-97 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 300 / 7e-97 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 297 / 7e-96 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 279 / 1e-88 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 273 / 4e-86 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 259 / 8e-81 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 234 / 3e-71 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005900 [exp] 292 / 1e-93 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 272 / 4e-86 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 271 / 1e-85 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 271 / 1e-85 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 260 / 2e-81 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 251 / 4e-78 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 89 / 1e-18 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 86 / 9e-18 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 74 / 4e-14 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.018G015700 [exp] 70 / 1e-12 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10013916 pacid=23170115 polypeptide=Lus10013916 locus=Lus10013916.g ID=Lus10013916.BGIv1.0 annot-version=v1.0 ATGAGAACCATCTCAACTTCTGCTTCCTTTCTTCCATATCTACCAAAACAAAGATCATCACTCACCACCAATGGCGCCAATTCACTCAAATCTTCTAATT ATTTCCCTTCTTCTCCAATACCCATTTCATCTTTCCCTCCAAAACCAATTCCCACACCATCAAGGCTCAATCTTTTAACCTCCTCTGTTTCGGCGAAACC AGTTGATCAGGCTGACATAATTGGCTTCGTAGAGAACTTCGACTGGTACGCGCAGTGGTACCTGGTGATGCCGGTGAGTGACCTGGACAAGAGGGTACCA CACGGGAAGAAAGTGCTGGGGATGGATGTGGTGGTGTGGTGGGATCGTAGGGAGAATTCATCTAAGGTGTTCAAAGATGTGTGTCCTCACCGTTTGGCTC CGTTATCGGAAGGAAGGATCGATCAGTCCTGGAGGCTGCAGTGTGTTTATCATGGTTGGTGCTTTGACGGCTCCGGCAGCTGCAAACTCATCCCTCAATC GCCTCCCGATGGCCCTCCTCCGCTCGATTTAAATGTGAGTAAACTCGACGTGGAAGGGTTCGATGCAGAGCTCGATTTCGGCCACAGTAAATTCCATGCA CCCTGCATCTTTTCCATGCATGTTGAAGTGCCGTCTCCTACCAATAAGCCATCGATGTCAGCAGTGATTTTCATTTGCATTCCGGTAAGTCCGGGGAACA GTAGATTGATCTGGGCATTTCCAAGCAACTATGGCATCTGGATTAGCAAAGTTGTTCCTAGATGGATGTTGCATATGAGGTCAAACTTTCTTCTGGATTC AGATTTGTATCTACTTCATGTAGAGGAGCGCAAGATCAAGGAAGTTGGCTCCGAAAATTGGCATAAGTCGTGTTTCGTGCCAACTAAATCGGACGCTTTA GTGGTTGGTTTTCGGAGATGGCTCAACAAATATGCCGGTGGTGAAGTTGACTGGAGAGGCAAGTATAGTGTTGATCTTCCTCCAACTTCCCCCAAGGAAC AACTTATGGATAGTAGTTGCAGTGGAGCATATAAAGGTCTCAATGCTCTCGAGACGATCCTCCAAGTGGCTGCTGTTGGATTTATCGGGATCGTTGTTGC AACCAAGCAAGGCACATTGTCAACAGAAGCAAGAGCCAGGCTAGGAATATTGGCCATTGTGTGTTTTGCGGCTTCGAGATGGTTGGCTTATTTCATCTAT AACAACTTACGTTACCACGGCTACGATCATATCGTGCTTGAAAAAATTATGTTTTTCGTTCGATTAGGCCTTTCTATTTAG
AA sequence Show only first row Show all	>Lus10013916 pacid=23170115 polypeptide=Lus10013916 locus=Lus10013916.g ID=Lus10013916.BGIv1.0 annot-version=v1.0 MRTISTSASFLPYLPKQRSSLTTNGANSLKSSNYFPSSPIPISSFPPKPIPTPSRLNLLTSSVSAKPVDQADIIGFVENFDWYAQWYLVMPVSDLDKRVP HGKKVLGMDVVVWWDRRENSSKVFKDVCPHRLAPLSEGRIDQSWRLQCVYHGWCFDGSGSCKLIPQSPPDGPPPLDLNVSKLDVEGFDAELDFGHSKFHA PCIFSMHVEVPSPTNKPSMSAVIFICIPVSPGNSRLIWAFPSNYGIWISKVVPRWMLHMRSNFLLDSDLYLLHVEERKIKEVGSENWHKSCFVPTKSDAL VVGFRRWLNKYAGGEVDWRGKYSVDLPPTSPKEQLMDSSCSGAYKGLNALETILQVAAVGFIGIVVATKQGTLSTEARARLGILAIVCFAASRWLAYFIY NNLRYHGYDHIVLEKIMFFVRLGLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	0	1
					Lus10017698 [exp]	1.0	0.9591
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	2.4	0.9395
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	3.5	0.9354
					Lus10002344 [exp]	3.9	0.8915
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	4.0	0.8973
					Lus10022938 [exp]	4.9	0.8617
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	5.9	0.8579
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039945 [exp]	6.7	0.8370
					Lus10012943 [exp]	6.9	0.8199
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	8.9	0.8288

Compare expression of checked genes

Lus10013916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.