Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25710 123 / 5e-33 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT1G68810 119 / 3e-31 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 106 / 2e-27 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G40200 106 / 3e-27 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 103 / 4e-26 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 58 / 2e-09 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 44 / 9e-05 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001885 [exp] 413 / 4e-147 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 182 / 1e-56 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10036175 [exp] 120 / 1e-33 AT3G25710 75 / 3e-16 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10035056 [exp] 117 / 2e-30 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 113 / 4e-30 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 115 / 2e-29 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 111 / 6e-29 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 110 / 3e-28 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 108 / 3e-28 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055700 [exp] 257 / 9e-86 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G065500 [exp] 251 / 6e-84 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 186 / 5e-58 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 178 / 5e-55 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G070800 [exp] 118 / 8e-32 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 115 / 7e-31 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 115 / 1e-30 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 117 / 2e-30 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 114 / 1e-29 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 106 / 3e-27 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013917 pacid=23170053 polypeptide=Lus10013917 locus=Lus10013917.g ID=Lus10013917.BGIv1.0 annot-version=v1.0 ATGTTTGCTGACGACGAGTACTTCTACAACTCTTCACCATTTGGGTACTCGGGGAAATTTTCCGCCGTGGATCATGATCTCCCGCCGTTTCCGGAGGCTT TCGATGGAGGTTTTTCTCGAGGTGGGTCTTTGTCGTCGTCGGCTTCACAGGCTTTGGTGCTGGACAGCGAGAGAGGCGAGCTAGTAAAAGCGCCGGCGAT GAGGGTTGCCGCCGGGAAGAAGGAGGTTTCGGAGGCGAAAGCTCTGGCGGCTTTGAAGAGTCACAGTGAAGCTGAGAGGAGGAGAAGGGAGAGGATCAAT GCCCATCTCGCCACTCTCCGTGGACTCATCCCCGGAACTGAAAAGATGGACAAAGCCACACTGCTTGCAGAAGTGATAAGCCAAGTCAAAATGCTGAAAC AGAATGCCATGGAATCCAGCAAGGGTCTCCTCATTCCAATGGACCACGACGAAGTCAAAGTCGTAGTCGAGCCATCACGAAACCAAGGGAGTACTACTCT CTCTTTCAAGGCATCTTTATGCTGCGAATACCGGCCTGAGCTCATGTCCGAGATACGACAAGCCATCGAATCCCTTCAGTTGAAGCTGGTGGATGCTGAG ATGTCGACTCTAGGAAGCCGGGTGAAGAGCGTGTTCATTCTCACAAAATGCGGAGGAGGAGCCGAAGATAATGTTGAGGCACAAAGCAATCTAGCAAGCT GCATTCACGAGGCATTGAGTTCTGTAGTGGAGAAAGGCTATGCCTCTGCAGAGTACTCACCAAGGACAATGATTCCCAACAAGAAGAGACGGGTGAGCTA TTTTGATTCGTCGAGCTCCTCGTGTTAG
AA sequence Show only first row Show all	>Lus10013917 pacid=23170053 polypeptide=Lus10013917 locus=Lus10013917.g ID=Lus10013917.BGIv1.0 annot-version=v1.0 MFADDEYFYNSSPFGYSGKFSAVDHDLPPFPEAFDGGFSRGGSLSSSASQALVLDSERGELVKAPAMRVAAGKKEVSEAKALAALKSHSEAERRRRERIN AHLATLRGLIPGTEKMDKATLLAEVISQVKMLKQNAMESSKGLLIPMDHDEVKVVVEPSRNQGSTTLSFKASLCCEYRPELMSEIRQAIESLQLKLVDAE MSTLGSRVKSVFILTKCGGGAEDNVEAQSNLASCIHEALSSVVEKGYASAEYSPRTMIPNKKRRVSYFDSSSSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	1.0	0.9757
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	2.0	0.9723
					Lus10002693 [exp]	2.6	0.9529
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	4.6	0.9572
					Lus10031026 [exp]	5.5	0.9464
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	7.7	0.9537
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	8.0	0.9542
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	8.0	0.9386
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	8.8	0.9535
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	8.8	0.9119

Compare expression of checked genes

Lus10013917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.