Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27430 303 / 5e-101 ARM repeat superfamily protein (.1) AT4G31890 122 / 6e-31 ARM repeat superfamily protein (.1.2) AT2G25130 120 / 2e-30 ARM repeat superfamily protein (.1) AT1G67530 67 / 4e-12 ARM repeat superfamily protein (.1.2) AT2G23140 62 / 3e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G24330 57 / 7e-09 ARM repeat superfamily protein (.1) AT3G54790 47 / 1e-05 ARM repeat superfamily protein (.1.2) AT5G62560 47 / 1e-05 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT1G27910 42 / 0.0007 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001881 [exp] 482 / 4e-171 AT2G27430 410 / 7e-141 ARM repeat superfamily protein (.1) Lus10041017 [exp] 129 / 2e-33 AT4G31890 621 / 0.0 ARM repeat superfamily protein (.1.2) Lus10013459 [exp] 127 / 2e-32 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10011514 [exp] 57 / 9e-09 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 57 / 9e-09 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10037005 [exp] 54 / 9e-08 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10015801 [exp] 51 / 6e-07 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 50 / 1e-06 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10033593 [exp] 46 / 2e-05 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065300 [exp] 356 / 1e-121 AT2G27430 449 / 2e-156 ARM repeat superfamily protein (.1) Potri.004G055500 [exp] 347 / 8e-118 AT2G27430 478 / 1e-167 ARM repeat superfamily protein (.1) Potri.006G263100 [exp] 124 / 8e-32 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G058000 [exp] 62 / 2e-10 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 61 / 5e-10 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.008G177100 [exp] 57 / 8e-09 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.015G071200 [exp] 46 / 3e-05 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.004G088800 [exp] 45 / 4e-05 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 44 / 6e-05 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.012G076400 [exp] 44 / 0.0001 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013918 pacid=23170048 polypeptide=Lus10013918 locus=Lus10013918.g ID=Lus10013918.BGIv1.0 annot-version=v1.0 ATGGTTGGTTCTGAAGTTGATTCCCGCCGGCGTGCCGCCGTTGCGGCGTTGATCGAGCTGGCCGACGGAACTTACACGAACAAGGCTCTAATTCTAGAAG CAGGAATCCTTTCAAAATTCCCCAAACGAATCGACACCATCATCACAGAACAATCCACCGTGGACAAGTGCTCAGAGCTAATCCAGTCATTGTCCACGCT GGCAAACACCCAGTTCCACCTCTCCCCGTCCGAGATCATCCCGCTCCTGGTCAGCACTCTCGAATCCTCCACCACTTCCACGTCAGCCAAACAATCCTGC CTGTCCGCATTATACAACCTCTCCTCCGCCTTGGAAAATGCAGTCGTTTTAGCCTCAAATGGTATCGTTCAGACCCTTCTTAATTTGGTCTCCAGAAAAG ACCTAGCTGAGAAGGCGTTAGCCGTTTTAGGGAACTTAGTGGTGACGGCAAATGGTAAAAGGGCGATGGAGGATGATGACGACAGCTCGTCGGCCGTCGT CCCAGGGGTGCTGATCGAGGTGCTGACGTGGCAAGACGAGCCGAGGTGTCAGGAGCTGTCGGCCTACGTGTTGATGCTCCTGGCCTACCAGAGCTCGGCC CAGAGGGAGAAGATGGCCCAATGCGGGATAGTGGCAGTGTTGTTGGAAGTTGGGCTTTTGGGAAGCCCGTTGGCGCAAAAGCGGGCCTTGAAGCTTCTCC AATGGTTTAGAGACGAGAGGGAGACGAAGATGGGCCGGCCCCACTCCGGGCCGCAAACGGGTAGGCTCGGGATCGGGTCGCCGATCAACCCGAGGGAAGC CCACGAAGGGAGGAAGATGATTAAGGATTTGGTCAGGCAGAGTTTGAATAAGAATTTGGAGATGATTACTAGAAGAGCTTCTGCTAGTAGTAGTAGTAGT GATGAAGGGATCAAAGTGAAGAGTTTGGTTGTTAGTACGAGTTCTAAGAGCTTGCCATACTAG
AA sequence Show only first row Show all	>Lus10013918 pacid=23170048 polypeptide=Lus10013918 locus=Lus10013918.g ID=Lus10013918.BGIv1.0 annot-version=v1.0 MVGSEVDSRRRAAVAALIELADGTYTNKALILEAGILSKFPKRIDTIITEQSTVDKCSELIQSLSTLANTQFHLSPSEIIPLLVSTLESSTTSTSAKQSC LSALYNLSSALENAVVLASNGIVQTLLNLVSRKDLAEKALAVLGNLVVTANGKRAMEDDDDSSSAVVPGVLIEVLTWQDEPRCQELSAYVLMLLAYQSSA QREKMAQCGIVAVLLEVGLLGSPLAQKRALKLLQWFRDERETKMGRPHSGPQTGRLGIGSPINPREAHEGRKMIKDLVRQSLNKNLEMITRRASASSSSS DEGIKVKSLVVSTSSKSLPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	0	1
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	6.6	0.9154
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	10.4	0.9138
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	14.0	0.8873
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	17.0	0.9029
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	18.7	0.8604
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	18.8	0.8964
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	23.6	0.8847
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	23.9	0.8613
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	28.8	0.8868
AT5G08450			unknown protein		Lus10019217 [exp]	34.3	0.8729

Compare expression of checked genes

Lus10013918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.