Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 290 / 2e-95 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 276 / 1e-92 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 282 / 2e-92 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22400 282 / 2e-92 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 277 / 1e-90 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G78270 269 / 2e-87 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 177 / 6e-52 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 175 / 2e-51 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 168 / 1e-48 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 164 / 2e-47 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013920 [exp] 566 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013921 [exp] 459 / 1e-164 AT1G22380 320 / 3e-107 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 462 / 4e-163 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 458 / 2e-161 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 424 / 6e-148 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 390 / 1e-134 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 368 / 6e-126 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 363 / 2e-124 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 311 / 1e-103 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 338 / 3e-114 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 335 / 2e-113 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 330 / 2e-111 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 330 / 3e-111 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 330 / 3e-111 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 330 / 4e-111 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 330 / 4e-111 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 328 / 2e-110 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 325 / 2e-109 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 325 / 2e-109 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013919 pacid=23170114 polypeptide=Lus10013919 locus=Lus10013919.g ID=Lus10013919.BGIv1.0 annot-version=v1.0 ATGCGTTTGAAAGATCTCCCCACGTTCATGAGAACTACAAATCCAAACGACGTCGTGTTTAATTTCTGCATCGACCAGCTCGCAAGAATTCCAGAGGGGT CAGCCCTAATTATGAACACATTCGATTCTTTGGAACAAGAAGTTTTGTCATCCATTTCGACACTTTGCCCGAATCTTCTCAGCGTTGGCCCGCTCACCAA CTTACTTGATCAAGTGAAAGAAGAAAAAGTAAAAAATATCAACACAAATCTATGGGCAGAACACCCTGAATCTCTAAAATGGCTAGACTCGCAGGAAGAT AATTCTGTGTTGTATGTGAACTTCGGAAGTGTCGCGGTGATGACCCCCGATCAGCTCACTGAATTTGCATGGGGGCTCGCGAAAAGCGAGAAGCCCTTTT TGTGGATAATTAGGCCGGACCTTGTTTATGGGAATTCGGAAGGCGCTCTGTCAGTGCCTTCCGGATTTGTGGAGGAAACAAGGGGTAGAGGCCTTTTGAC AAGTTGGTGTAATCAAGAACAAGTTTTGAAACACCGTTCAGTCGGAGGTTTCTTGAGTCATATGGGGTGGAACTCGACGTTGGAGAGCATTTTAAATGGA GTGCCCATAGTTTGTTGGCCGTTCTTTGCAGATCAACAGACAAATTGCTTCTATGCTTGTAGAGAATGGGGGATTGGGATGGAGATTGGTTCGGAAGTGA AGAAGGGGGCAGTTGAGAAACTTGTGAGAGAAGTAATGGGTGGGGAGAAAGGTAAGGAGATGAAGAGGAAAGCTATGGAGTGGAAATTAAAGGCGGAAGA AGCTACTCAACCGGGTGGGTCGTCGTTTCGAAATCTGGACAAACTGATTGAGATACTGTTACAGAACACAACTAATTGA
AA sequence Show only first row Show all	>Lus10013919 pacid=23170114 polypeptide=Lus10013919 locus=Lus10013919.g ID=Lus10013919.BGIv1.0 annot-version=v1.0 MRLKDLPTFMRTTNPNDVVFNFCIDQLARIPEGSALIMNTFDSLEQEVLSSISTLCPNLLSVGPLTNLLDQVKEEKVKNINTNLWAEHPESLKWLDSQED NSVLYVNFGSVAVMTPDQLTEFAWGLAKSEKPFLWIIRPDLVYGNSEGALSVPSGFVEETRGRGLLTSWCNQEQVLKHRSVGGFLSHMGWNSTLESILNG VPIVCWPFFADQQTNCFYACREWGIGMEIGSEVKKGAVEKLVREVMGGEKGKEMKRKAMEWKLKAEEATQPGGSSFRNLDKLIEILLQNTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	2.0	0.9885
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	2.2	0.9762
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	2.8	0.9885
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	3.2	0.9195
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	3.5	0.9885
					Lus10032915 [exp]	3.7	0.8736
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	4.0	0.8490
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	4.0	0.9885
AT1G08580			unknown protein		Lus10000388 [exp]	5.8	0.8199
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	5.9	0.9459

Compare expression of checked genes

Lus10013919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.