Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 459 / 7e-159 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 457 / 2e-158 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 457 / 4e-158 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 447 / 3e-154 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 432 / 1e-148 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 423 / 5e-145 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G11340 221 / 8e-67 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 206 / 7e-61 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 197 / 8e-58 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 195 / 6e-57 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013922 [exp] 738 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 726 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 665 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 627 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 566 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013919 [exp] 566 / 0 AT1G22380 318 / 2e-106 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 561 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 476 / 2e-165 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10031388 [exp] 474 / 1e-164 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 521 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 520 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 508 / 2e-178 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 504 / 5e-177 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 492 / 6e-172 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 491 / 7e-172 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 487 / 3e-170 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 486 / 7e-170 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 484 / 4e-169 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 483 / 2e-168 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013920 pacid=23170057 polypeptide=Lus10013920 locus=Lus10013920.g ID=Lus10013920.BGIv1.0 annot-version=v1.0 ATGCTCCACGTGGCAAAGCTCCTCCATTCACGCGGCTTCCATGTCACCTTCGTCAACACGGACTACAACCACAAGCGGCTGCTCAAGTCATGGGGCGCCG CCGCCTCCTTCCCGTCAGGGTTCGACTTTGAGTCGATCCCAGACGGGCTACCGCAGTCCAACAACATCGACTCATCGCAAAGCATGACTTCCCTGTGTGT TTCCATCACCAATAACTTATTGGCTCCGTTCAGGGACTTGGTGCAGAAGCTAAATGATAGGAACAACGTCGTTTCGCCACGTGTCAGCTGTATCATTTCC GACGCGGCCATGGGTTTCACGTTGGATGTGGCTAGGGAGCTCGGGATTCCTGACGCGCTTTTCCTGTGTCCGAGCGCATGTGCCAACTTGCCCTTGCTCA GCTACCCTGTCCTCGTCGAGAGAGGCTTGGTGCCTCTTAAAGATTCGAGCTACTTAACTAACGGATACCTAGATACGGTCGTGGATTGCATTTTGGGACT AAACAAGAACATGCGTTTGAAAGATCTCCCCACGTTCATGAGAACTACAAATCCAAACGACGTCGTGTTTAATTTCTGCATCGACCAGCTCGCAAGAATT CCAGAGGGGTCAGCCCTAATTATGAACACATTCGATTCTTTGGAACAAGAAGTTTTGTCATCCATTTCGACACTTTGCCCGAATCTTCTCAGCGTTGGCC CGCTCACCAACTTACTTGATCAAGTGAAAGAAGAAAAAGTAAAAAATATCAACACAAATCTATGGGCAGAACACCCTGAATCTCTAAAATGGCTAGACTC GCAGGAAGATAATTCTGTGTTGTATGTGAACTTCGGAAGTGTCGCGGTGATGACCCCCGATCAGCTCACTGAATTTGCATGGGGGCTCGCGAAAAGCGAG AAGCCCTTTTTGTGGATAATTAGGCCGGACCTTGTTTATGGGAATTCGGAAGGCGCTCTGTCAGTGCCTTCCGGATTTGTGGAGGAAACAAGGGGTAGAG GCCTTTTGACAAGTTGGTGTAATCAAGAACAAGTTTTGAAACACCGTTCAGTCGGAGGTTTCTTGAGTCATATGGGGTGGAACTCGACGTTGGAGAGCAT TTTAAATGGAGTGCCCATAGTTTGTTGGCCGTTCTTTGCAGATCAACAGACAAATTGCTTCTATGCTTGTAGAGAATGGGGGATTGGGATGGAGATTGGT TCGGAAGTGAAGAAGGGGGCAGTTGAGAAACTTGTGAGAGAAGTAATGGGTGGGGAGAAAGGTAAGGAGATGAAGAGGAAAGCTATGGAGTGGAAATTAA AGGCGGAAGAAGCTACTCAACCGGGTGGGTCGTCGTTTCGAAATCTGGACAAACTGATTGAGATACTGTTACAGAACACAACTAATTGA
AA sequence Show only first row Show all	>Lus10013920 pacid=23170057 polypeptide=Lus10013920 locus=Lus10013920.g ID=Lus10013920.BGIv1.0 annot-version=v1.0 MLHVAKLLHSRGFHVTFVNTDYNHKRLLKSWGAAASFPSGFDFESIPDGLPQSNNIDSSQSMTSLCVSITNNLLAPFRDLVQKLNDRNNVVSPRVSCIIS DAAMGFTLDVARELGIPDALFLCPSACANLPLLSYPVLVERGLVPLKDSSYLTNGYLDTVVDCILGLNKNMRLKDLPTFMRTTNPNDVVFNFCIDQLARI PEGSALIMNTFDSLEQEVLSSISTLCPNLLSVGPLTNLLDQVKEEKVKNINTNLWAEHPESLKWLDSQEDNSVLYVNFGSVAVMTPDQLTEFAWGLAKSE KPFLWIIRPDLVYGNSEGALSVPSGFVEETRGRGLLTSWCNQEQVLKHRSVGGFLSHMGWNSTLESILNGVPIVCWPFFADQQTNCFYACREWGIGMEIG SEVKKGAVEKLVREVMGGEKGKEMKRKAMEWKLKAEEATQPGGSSFRNLDKLIEILLQNTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	1.0	1.0000
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	1.4	1.0000
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	1.7	1.0000
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	2.0	0.9885
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	2.4	0.9651
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	2.6	0.9586
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	3.2	0.9739
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	3.2	0.9295
					Lus10013881 [exp]	4.0	0.9563
					Lus10030782 [exp]	4.2	0.9466

Compare expression of checked genes

Lus10013920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.