Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 533 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 518 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 514 / 3e-180 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 504 / 1e-176 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 493 / 5e-172 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 488 / 4e-170 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 250 / 3e-77 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 248 / 8e-77 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G11340 247 / 1e-76 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 247 / 2e-76 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013923 [exp] 805 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 775 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 741 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 664 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 641 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 621 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013921 [exp] 608 / 0 AT1G22380 320 / 3e-107 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 539 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 533 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 593 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 592 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 564 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 559 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 557 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 553 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 552 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 549 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 546 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 545 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013922 pacid=23170094 polypeptide=Lus10013922 locus=Lus10013922.g ID=Lus10013922.BGIv1.0 annot-version=v1.0 ATGACTTCATCTGTCGCCGCCGTCGAAAAAACACCACCACACGTCGTCTGTGTCCCATTCCCGGCGCAAGGCCACATAAACCCGATGCTCCAAGTGGCAA AGCTCCTTCATTCCCGTGGCTTCTACGTCACCTTCGTCAACACGGACTACAACCACAAGCGCCTGCTCAAGTCTTGGGGCGCCCGCGCCGGCTCCTCCTT CCCGCCGGGGTTCGACTTTGAGTCGATCCCTGACGGCCTACCGCCGTCCGACAACATCGATTCAACCCAAAGCATGACTTCACTGTGCGGTTCTGTCACT AAAAACTGCCTGGCTCCGTTTAGGGACTTGGTGCACAGGCTAAACGACGGGGATGGCAACGTTTCGCCGCGTGTCAGCTGTATAATGTCTGACGCGGGCA TGGCTTTCACGTTGGATGTGGCTAGGGAGCTCGAGATTCCTGACGCGCTCTTCCTGGCACCGAGCGCGTGTGCCAACTTGGGCTTACTCAGCTACCCTGC CCTCGTCAAGAAAGGCTTGGTGCCTCTTAAAAATTCGAGCTACTTAATTAATGGATACCTAAACACAGTAGTGGATTGCATTCCGGGACTAAATAAAAAC ATGTGTATGAAAGATCTTCCTACGTTCGTGAGAACTACAGATCCAAATGATGTTATGTTCAACTACTTCGTAAACGAGCTTGCAAGAATTCCAGAGGGAT CGGCCCTAATTATGAACACATTTGACTCCTTGGAACATGAAGTTTTGACATCCCTTTCCTCACTTTATCCGAATCTTCTCGTCATTGGCCCTCTCACCAA CTTACTTCATCAGGTGAAAGAAGAGAAAGTAAAGAACATCAACACAAGTTTATGGACAGAACACCATGAATATGTAGAATGGCTAGACTCACAGACAGAT AACTCTGTTTTGTACGTGAATTTCGAAAGTATTGTTGTGATGACTCCCGATCAGCTCGTTGAATTTGCTTGGGGGCTCGCAAAAAGTGAGAAGCCTTTCT TATGGATAATCAGGTCTGACCTTATTTCTGGAAATTCATCAGGCACATTATCAGTGCCTGTCGAATTTTTGGAAGAAACAAAAGACAGAGGTCTGTTGGT AGGGTGGTGTGATCAGGAACGAGTTTTGAAACACCGTTCCATCGGAGGGTTCTTGAGTCATATGGGATGGAACTCGACACTGGAGAGCATTTCAAACGGA GTGCCGATGGTTTGTTGGCCGTTTTTCGCGGATCAACAGACGAACTGCTTCTATGCTTGTAGAGAATGGCGGGTCGGGATGGAGATTGGTTTTGAAGTGA AGAGGGGGGAAGTTGCGAAACTTGTGAGAGAGGTAATGGGTGGGCAGAAGGGTAAGGAGATGAAGAGGAAAGCTATGGAGTGGAAAGTTAAGGCCGAGGA AGCAACACGATCTGGTGGATCGTCATTTCAGAATCTGGATAAACTGATCGAGATATTGTCGCAGAACACAACCAATTGA
AA sequence Show only first row Show all	>Lus10013922 pacid=23170094 polypeptide=Lus10013922 locus=Lus10013922.g ID=Lus10013922.BGIv1.0 annot-version=v1.0 MTSSVAAVEKTPPHVVCVPFPAQGHINPMLQVAKLLHSRGFYVTFVNTDYNHKRLLKSWGARAGSSFPPGFDFESIPDGLPPSDNIDSTQSMTSLCGSVT KNCLAPFRDLVHRLNDGDGNVSPRVSCIMSDAGMAFTLDVARELEIPDALFLAPSACANLGLLSYPALVKKGLVPLKNSSYLINGYLNTVVDCIPGLNKN MCMKDLPTFVRTTDPNDVMFNYFVNELARIPEGSALIMNTFDSLEHEVLTSLSSLYPNLLVIGPLTNLLHQVKEEKVKNINTSLWTEHHEYVEWLDSQTD NSVLYVNFESIVVMTPDQLVEFAWGLAKSEKPFLWIIRSDLISGNSSGTLSVPVEFLEETKDRGLLVGWCDQERVLKHRSIGGFLSHMGWNSTLESISNG VPMVCWPFFADQQTNCFYACREWRVGMEIGFEVKRGEVAKLVREVMGGQKGKEMKRKAMEWKVKAEEATRSGGSSFQNLDKLIEILSQNTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	1.0	0.9891
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	1.4	0.9599
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	2.0	0.9440
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	3.0	0.9535
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	3.0	0.9198
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023514 [exp]	3.2	0.9405
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10003058 [exp]	10.2	0.9256
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	13.0	0.8917
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	16.1	0.9383
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	17.5	0.9032

Compare expression of checked genes

Lus10013922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.