Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 490 / 6e-171 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 480 / 6e-167 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 479 / 1e-166 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 475 / 5e-165 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 472 / 7e-164 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 447 / 6e-154 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 226 / 3e-68 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 224 / 5e-68 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 213 / 2e-63 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 212 / 4e-63 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013922 [exp] 750 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 710 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 695 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 637 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 590 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10000993 [exp] 587 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 506 / 3e-177 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 501 / 3e-175 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 496 / 4e-173 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 555 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 553 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 535 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 533 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 526 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 520 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 512 / 1e-179 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 511 / 2e-179 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 507 / 2e-177 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 503 / 7e-176 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013923 pacid=23170106 polypeptide=Lus10013923 locus=Lus10013923.g ID=Lus10013923.BGIv1.0 annot-version=v1.0 ATGACTACTGTCGCCACCGTCGAGAAATCGCCGCCACATGTCGTCTGCGTCCCATTCCCGGCGCAAGGCCACATAAACCCGATGCTCCACGTGGCAAAGC TCCTCCATTCCCGCGGTTTCCACGTCACCTTCATCAACACGGACTACAACCACAACCGCATGCTCAAGTCCTGGGGTGCCAGCGGTGGCTCCTCCATCCC GCCGGGGTTCGACTTCGAGTCGTTCCCCGACGGCCTACCACTGTCCGACAACGTTGATACAACCCAAGACATCCCTTCGCTGTGCGATTCCATCGCCAAA AACTGTCTGGCTCCGTTTAGGGACTTGGTGCACAGGCTGAATGAAAACGACGTCGTTTCGCCACGTGTCAGCTGTATCTTGTCCGACGCGGCCATGGCTT TCACGTTGGATGTGGCTAAGGAGTTAGGGGTTCCTGACGCGCTCTTCTTGACTCCGAGCGCGTGTGCCAACTTGGGCTTCCTCAGCTACCATGTCCTCGT CAAGAGGGGCTTGGTGCCTCTTAAAAATTCGAGCTACTTAACTAATGGATATCTCGACACAGTCGTTGATATTCCGGGATTAAATAAGAACATGTGTTTG AAACATCTCCCTACGTTTGTGAGAACGACCGACCCAAACGATGTGGTATTCAACTTCTGTGTGAACGAGCTCGCAAGAATTCCAGAAGGATCGACCCTAA TTATGAACACATTCGATTCCTTAGAAAAAGAAGCTTTGGCATCCCTTTCCCCACTTTGCCCGAATCTTCTCACGGTCGGCCCGCTCATCAACTTACTTGA TCAAGTGAAAGAAGAAAAATTGAACAACATCGACGCAAATCTATGGATAGAACACCCCGAATCTCTACAATGGCTAGACTCACAGGAAGACAATTCCGTG TTGTATGTGAATTTCGGAAGTATCACGGTGATTACCCCCGATCAACTCGCTGAATTCGCTTGGGGGTTAGCGAAAAGCGAGAAACCCTTTTTGTGGATAA TCAGGAATGACCTTGTTTTTGGAAATTCAGAAGGGGCTGATCTGTCTGTACCTTCCGAATTCATCAAGGAAACAAGGGGCAGAGGGTTGGTAGCCGGGTG GTGCAATCAGGAACAAGTTTTGAAACACCCTTCGATCGGAGGGTTCTTGAGTCACATGGGGTGGAACTCGACGCTGGAGAGCATTTCGAACGGAGTGCCG ATGATTTGTTGGCCGTTTTTCGCTGATCAACAGACGAACTGCTTCTATGCTTGTAGAGAATGGGGGATTGGGATTGAGATCGACTCCGAAGTGAAGAGGG AGGAAGTTGAGAAACTTGTGAGAGAGGTAATGGGTGGGGAGAAAGGTAAGGAGATGAAGAGGAAAACTATGGAGTGGAAAGTTAAAGCCGAGGAAGCAAC TAATTCCGATGGATCGTCATTTCAAAATCTGGAAAAACTGATCGAAATATTGTTGCAGAAATAG
AA sequence Show only first row Show all	>Lus10013923 pacid=23170106 polypeptide=Lus10013923 locus=Lus10013923.g ID=Lus10013923.BGIv1.0 annot-version=v1.0 MTTVATVEKSPPHVVCVPFPAQGHINPMLHVAKLLHSRGFHVTFINTDYNHNRMLKSWGASGGSSIPPGFDFESFPDGLPLSDNVDTTQDIPSLCDSIAK NCLAPFRDLVHRLNENDVVSPRVSCILSDAAMAFTLDVAKELGVPDALFLTPSACANLGFLSYHVLVKRGLVPLKNSSYLTNGYLDTVVDIPGLNKNMCL KHLPTFVRTTDPNDVVFNFCVNELARIPEGSTLIMNTFDSLEKEALASLSPLCPNLLTVGPLINLLDQVKEEKLNNIDANLWIEHPESLQWLDSQEDNSV LYVNFGSITVITPDQLAEFAWGLAKSEKPFLWIIRNDLVFGNSEGADLSVPSEFIKETRGRGLVAGWCNQEQVLKHPSIGGFLSHMGWNSTLESISNGVP MICWPFFADQQTNCFYACREWGIGIEIDSEVKREEVEKLVREVMGGEKGKEMKRKTMEWKVKAEEATNSDGSSFQNLEKLIEILLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013923 [exp]	0	1
					Lus10003825 [exp]	3.3	0.9878
					Lus10029261 [exp]	4.7	0.9878
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10033047 [exp]	5.3	0.8926
AT5G57750			RING/U-box superfamily protein...		Lus10016542 [exp]	5.7	0.8498
AT5G56990			unknown protein		Lus10029528 [exp]	5.7	0.9878
					Lus10038051 [exp]	6.6	0.9878
AT5G01660			unknown protein		Lus10040599 [exp]	7.4	0.9878
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	8.1	0.9878
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	8.8	0.9878
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	9.4	0.9857

Compare expression of checked genes

Lus10013923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.