Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 498 / 7e-174 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 492 / 8e-172 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 486 / 3e-169 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22380 483 / 4e-168 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 480 / 7e-167 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 466 / 2e-161 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 229 / 5e-69 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 223 / 4e-67 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G59590 219 / 5e-66 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 218 / 2e-65 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013923 [exp] 667 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 667 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 629 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 617 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 605 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 604 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 513 / 8e-180 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 510 / 1e-178 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 499 / 4e-174 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 547 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 546 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 535 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 534 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 534 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 533 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 533 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 530 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 526 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 524 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013924 pacid=23170044 polypeptide=Lus10013924 locus=Lus10013924.g ID=Lus10013924.BGIv1.0 annot-version=v1.0 ATGAGACCGGCCGCCGCCGAAACCCAGCCGGCGCCGCCGCACGCCGTCTGCGTCCCGTTCCCGGCGCAGGGACACATAAACCCGATGCTCCACGTGGCCA AAATCCTCTACTCAAACGGCTTCCACGTCACGTTCGTCAACACGGAGTACAACCACAAACGTCTCCTCAAATCCCACGGCGGCGACTTTGTCACCCTGCC ACCGGGGTTTCGCTTCGAGTCGATCCCCGACGGTCTTCCGCCGTCGGAGAACATCGACTCGACCCAGGACCTCACTTCTTTGTGCAATTCCATTGCCAAG AACTTTCTAGCTCCGTTCAGGGAGTTGGTGCGTAGGCTGAACGAGGACGACGTTGTTTTGCCGAGGGTTAGCTGTATCGTGTCAGATTCTTCCATGGCGT TCACGCTGGATGTGTCGAAGGAGCTCGGGATTCCCAACGCGCTGTTTTCGACCCCGAGCGCGTGTGCGAGCTTGGTCTACCTCAACTACAATCGTCTCGT AGAGACAGGGCTGGTGCCCCTCAAAGATTCAAGCTACCTAACTAACGGGTATTTGGAAACAATCATAGATTGTATTCCGGGACTAAACAAGAACATTCGT CTCAAAGATCTTCCTACATTTGTGAGAATCACGGATCCAAACGACATAATTTTCAATTTTTGTCTGAAAGAACTTGCAAGAATTCATAAAGCGTCGGCCG TATTTGTGAACACATTCGATGCATTGGAACACGAGGCTCTATCGTCACTTTCGCCACTCTGCCCCAATCTTCTCACCGTCGGTCCGCTCAACTTACTCAA TCATCAAACAACAGGAGACAAACTAAAGAGCATCACCACAAATTTGTGGACAGAACATCACGAATCGGTACAATGGCTCGACTCGAAAGAACCCGACTCA GTTCTGTATGTGAACTTCGGGAGCATCACTGTAATGACTCCTGATCAGCTCATCGAGTTCGCGTGGGGTCTCGCGAAAAGTGGGAAGTCCTTCTTATGGG TAATTAGGTCGGATCTTATTTCTGGAAATTCGACAGGTACATTATCAGTGCCTGCCGAATTTGTGGAGGAAACCAAGGGTAGGGGCCTGTTAACTGGGTG GTGTAATCAGGAACAAATCCTTAAACACCCTTCGGTCGGAGGGTTTTTGAGTCACATGGGGTGGAACTCGACAACGGAGAGCCTGTCGAACGGAGTGCCG ATGATATGTTGGCCGTTTATTGCCGATCAACAAACGAATTGCTTCTATGCTTGTAGAGAATGGGGGGTCGGAATGGAGATCGATCTGAAAGTGAAGAGGG AGGAAGTCGAGAAACTTGTGAGGGAAGTAATGGGTGGGGAGAAAGGTAAGGAAATGAAAAGAAAAGCTATGGAGTGGAAAGTGAAGGCCGAAGAAGCTAC TCAACCCGGTGGATCGTCGTTTCAGAATATGGAGAGACTGATTGAAGTGTTGTTGCATAACGAAGACGATTGA
AA sequence Show only first row Show all	>Lus10013924 pacid=23170044 polypeptide=Lus10013924 locus=Lus10013924.g ID=Lus10013924.BGIv1.0 annot-version=v1.0 MRPAAAETQPAPPHAVCVPFPAQGHINPMLHVAKILYSNGFHVTFVNTEYNHKRLLKSHGGDFVTLPPGFRFESIPDGLPPSENIDSTQDLTSLCNSIAK NFLAPFRELVRRLNEDDVVLPRVSCIVSDSSMAFTLDVSKELGIPNALFSTPSACASLVYLNYNRLVETGLVPLKDSSYLTNGYLETIIDCIPGLNKNIR LKDLPTFVRITDPNDIIFNFCLKELARIHKASAVFVNTFDALEHEALSSLSPLCPNLLTVGPLNLLNHQTTGDKLKSITTNLWTEHHESVQWLDSKEPDS VLYVNFGSITVMTPDQLIEFAWGLAKSGKSFLWVIRSDLISGNSTGTLSVPAEFVEETKGRGLLTGWCNQEQILKHPSVGGFLSHMGWNSTTESLSNGVP MICWPFIADQQTNCFYACREWGVGMEIDLKVKREEVEKLVREVMGGEKGKEMKRKAMEWKVKAEEATQPGGSSFQNMERLIEVLLHNEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	0	1
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	2.4	0.9656
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	4.2	0.9679
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	7.0	0.9561
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	9.4	0.9551
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	12.1	0.9692
AT1G13140		CYP86C3	"cytochrome P450, family 86, s...		Lus10032085 [exp]	13.6	0.9281
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	15.0	0.9013
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	17.2	0.9486
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	20.0	0.9146
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	25.3	0.9087

Compare expression of checked genes

Lus10013924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.