Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 516 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 508 / 4e-178 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 503 / 3e-176 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 503 / 3e-176 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 494 / 2e-172 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 469 / 1e-162 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G36970 234 / 4e-71 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 228 / 1e-68 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 223 / 5e-67 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 220 / 3e-66 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013924 [exp] 624 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 595 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 590 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 566 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 545 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 541 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 511 / 2e-179 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 509 / 2e-178 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 499 / 2e-174 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 557 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 554 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 544 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 529 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 529 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 525 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 523 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 523 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 522 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 517 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013925 pacid=23170049 polypeptide=Lus10013925 locus=Lus10013925.g ID=Lus10013925.BGIv1.0 annot-version=v1.0 ATGACGAGTCCACCCCCAAAACCACACGCCGTATGCGTCCCATTCCCAGCTCAGGGACACATAAACCCGATGCTCCAGCTCTCCAAGCTCCTCTACTCCC GCGGCTTCCACGTCACCTTCGTCAACACCGAGCACAACCACAGGCGCCTCCTCGAAACCCGGGGAAGCGCCTTCTTTGACTCTCTGCCGTTGGGTTTTGA GTTCGAATCCATACCCGACGGTCTTCCTGATGACGTGGGTGCCACTCGGGACATTCCTGCCCTGTGTGACTCCTTGTCAAAAAACTCTACGGCGCCGTTT CGAGAGCTGGTTAATCGGCTCAACGAAAGGACGCCGCCCGTTAGCTGTGTTGTGTCGGATGGTGTGATGGCTTTCACTCTGGAAGTGGCCGACGAGCTTG GGATTCCTGACGTGCTGTTTTGGACGCCGAGTGCTTGTGGGGTTTTGGCTTATGTTAACTACCAACTTCTTGCTCAGAGAGGGTTGGTTCCTCTCAAAGA TTCAAGCGACCTGAAGAGCGGATACTTGGACACAACAGTGGACTTCATCACAGGATTGAACAAGAACATCCGCCTCAAAGATCTTCCATCCTTCATCCGT ACGACCGACACGAATAACATCATGTTCAATTTCTTATCGAAAGAAGCGTCGAAAATTCGCAAAGCATCCGCCCTACTTATCAACACATTCGACGATCTAG AACACGATGCTCTAGCCGCTCTGTCGCCACTTACACCGAATCTCTTCACCGTCGGTCCGGTCAACTTACTCACCCCTCACATCACACAAAACAAAAGAGT ACTAGAGAACATCAACGCGAATCTATGGGCCGAACAATCAGAATGGGCCGGATGGCTCGACTCGAGAGAGCCCAACTCTGTTTTGTATGTGAGCTTCGGG AGTCTCACAGTGATGACTCCAGACCAGCTCACTGAATTCGCATGGGGACTCGCCATGAGCGGGGTACCCTTCTTGTGGGTAATCCGACCCGACCTTGTTT CTGAAAACCCGACTGCTGGATTTTCGAAATTCATGGAGGAAACCAAGGACAGGGGCATGTTGATCGGGTGGTGCAATCAGGAACAGGTTTTGCAACACCC GTCGATCGGAGGGTTTCTGAGTCACGTGGGGTGGAACTCGATGCTCGAGAGCTTGTCGAATGGAGTGCCGATGATATGCTGGCCGTTTTTTGCGGAGCAG CAGACGAACTGCTTCTATGCTTGTGAGGAATGGGGGGTTGGAATGGAGACCGACTCCGAAGTGAAGAGGGAGGAAGTTGAGAAACTTGTGAGAGAAGTAA TGGGTGGGGAGAAAGGTAAAGAGATGAAGAGGAAAGCTATGGAGTGGAAACTGAAGGCGGAAGAAGCTACTCAACCGGGTGGACCGTCGTTTCGAAATGT GGAAAGACTCATTCAAGTGCTGTTGCAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10013925 pacid=23170049 polypeptide=Lus10013925 locus=Lus10013925.g ID=Lus10013925.BGIv1.0 annot-version=v1.0 MTSPPPKPHAVCVPFPAQGHINPMLQLSKLLYSRGFHVTFVNTEHNHRRLLETRGSAFFDSLPLGFEFESIPDGLPDDVGATRDIPALCDSLSKNSTAPF RELVNRLNERTPPVSCVVSDGVMAFTLEVADELGIPDVLFWTPSACGVLAYVNYQLLAQRGLVPLKDSSDLKSGYLDTTVDFITGLNKNIRLKDLPSFIR TTDTNNIMFNFLSKEASKIRKASALLINTFDDLEHDALAALSPLTPNLFTVGPVNLLTPHITQNKRVLENINANLWAEQSEWAGWLDSREPNSVLYVSFG SLTVMTPDQLTEFAWGLAMSGVPFLWVIRPDLVSENPTAGFSKFMEETKDRGMLIGWCNQEQVLQHPSIGGFLSHVGWNSMLESLSNGVPMICWPFFAEQ QTNCFYACEEWGVGMETDSEVKREEVEKLVREVMGGEKGKEMKRKAMEWKLKAEEATQPGGPSFRNVERLIQVLLQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	0	1
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	3.3	0.9371
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	4.9	0.9226
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	6.2	0.9188
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	7.2	0.9188
					Lus10022511 [exp]	8.1	0.9188
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	8.3	0.7528
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	8.8	0.9188
					Lus10005843 [exp]	9.5	0.9188
					Lus10010827 [exp]	10.2	0.9188
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	10.2	0.7107

Compare expression of checked genes

Lus10013925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.