Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 69 / 9e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000990 [exp] 548 / 0 AT2G31130 70 / 3e-13 unknown protein Lus10033615 [exp] 68 / 1e-12 AT2G31130 101 / 2e-23 unknown protein Lus10017672 [exp] 66 / 5e-12 AT2G31130 100 / 4e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055300 [exp] 69 / 3e-13 AT2G31130 66 / 5e-12 unknown protein Potri.001G376800 [exp] 67 / 3e-12 AT1G17780 82 / 3e-17 unknown protein Potri.019G089900 [exp] 67 / 4e-12 AT2G31130 84 / 1e-17 unknown protein Potri.011G065100 [exp] 64 / 1e-11 AT2G31130 63 / 8e-11 unknown protein Potri.013G118000 [exp] 61 / 3e-10 AT2G31130 85 / 8e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013926 pacid=23170130 polypeptide=Lus10013926 locus=Lus10013926.g ID=Lus10013926.BGIv1.0 annot-version=v1.0 ATGCAGCTATACATCTGTCCTGAGTTTATCAAAGTTTTCGAGACGAAAGTCTTCAAGATGATCGATGACGAAACGACTGCGACTTGGGTTGGAGGTATAT ACAGAAAGCTTGAAGCTTTGTGTTTGGAAGCTGATGATATCTTGCGACAGGAAGCACACGAGTTCATTGAAAACCATCTACAGCCAGTGGGTTCGAACGT CAAGCAGTTCTACTCGGAGCTCGTTCGAGACATCCTTCCTCCTCAGTCCTCGCCTGATGGATCGTCAGAGGTAGAACAGCATGATCTGGTGTTGAAGGAA ACTACTGATTCGTTCACGAACGTGAGCTTCGAGGTATCTGATGAAAAGAAGCAACTTGAAGAGCAGAAGTATCAAGGTAAGTCAGAGGTCACACAAACTG TTGATATTCTGGTCAATGGGGAATCCAACGCAACCTCCGAAGATAACGAAATATCTGATGATGACATGTACACGCCAGCAACCTCTGACGACCTATCAGA GAGTATCTCATCCTTGGACGTTCAGTCTCTAGTATCTGTGGAGCTTAGGAACTCCAATGAAGACGAAGCCTTGAATATTGACCATGTTCAAGACAATGGT CCTTGTGAACAAATCACTGCAGGAAACTCCAATTCGAGTTTGATATCTGGAAATCCAGCCAAGCTCGACGAAAGCTGCATTCTTGTGAACAATGATGATG AGGAGTATGTTCTTTCGCTTCGCGAGAAAAGACGCTGGAGTTACAAGAAAAACTGGAAGCAGAAAGTTTTGGCCTTGGCATCAAAGTCCTTGAAGCAGAA GCAAAGCCAAAGACTTTGTCCTTCTGCAGTAGCTAGTGTGGAAACTAGAGAATATGACGAAGCTGCATTTTCGCAGTCGATTACAGACAAGGAGAACTGT GATTCCGACTGGGAAATCATCTAG
AA sequence Show only first row Show all	>Lus10013926 pacid=23170130 polypeptide=Lus10013926 locus=Lus10013926.g ID=Lus10013926.BGIv1.0 annot-version=v1.0 MQLYICPEFIKVFETKVFKMIDDETTATWVGGIYRKLEALCLEADDILRQEAHEFIENHLQPVGSNVKQFYSELVRDILPPQSSPDGSSEVEQHDLVLKE TTDSFTNVSFEVSDEKKQLEEQKYQGKSEVTQTVDILVNGESNATSEDNEISDDDMYTPATSDDLSESISSLDVQSLVSVELRNSNEDEALNIDHVQDNG PCEQITAGNSNSSLISGNPAKLDESCILVNNDDEEYVLSLREKRRWSYKKNWKQKVLALASKSLKQKQSQRLCPSAVASVETREYDEAAFSQSITDKENC DSDWEII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31130			unknown protein		Lus10013926 [exp]	0	1
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	2.2	0.8406
AT2G31130			unknown protein		Lus10000990 [exp]	3.2	0.8482
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	9.2	0.8123
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	9.5	0.8362
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	9.8	0.8257
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	11.4	0.8470
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	15.2	0.8409
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	15.6	0.8243
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	16.9	0.7885
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	19.3	0.7556

Compare expression of checked genes

Lus10013926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.