Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34090 629 / 0 MEE18 maternal effect embryo arrest 18 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000989 [exp] 293 / 1e-94 AT2G34090 231 / 6e-71 maternal effect embryo arrest 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065000 [exp] 663 / 0 AT2G34090 622 / 0.0 maternal effect embryo arrest 18 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01933 [flax] [poplar] UPF0052 Uncharacterised protein family UPF0052
Representative CDS sequence Show only first row Show all	>Lus10013927 pacid=23170128 polypeptide=Lus10013927 locus=Lus10013927.g ID=Lus10013927.BGIv1.0 annot-version=v1.0 ATGGCGGATGGTTGGTTGGGGCCCTCCTCCTCCTCCATAGCCAAGACCGCTTCTTCTTCCCTTCTCCTCCACTCTCCCAACGTTCCTCTGAGATCCGTTT CCATGGCTGCCACAGCCTCTCAAACCCAATACGCCGCCAATTCCTCATCATCAGTCTCCAGCCCTAGGCCTACTCAGCCTTCCCTCCTCGTCTTTTCCGG CGGCACGGCGTTCAATGGCGTCGTGGAGGAGCTCAAGAAGCTCACAACTCGGGTGGCCCACGTTCTTCCTGTCTCCGATGACGGTGGCAGCACAGCTGAG ATTGTTCGAGTCCTTGGTGGTCCGGCTGTCGGAGACATAAGGTCAAGGTGTTTGCGGTTGTCCGATCAAAGCACGGTCGAGGCACTGGCGGTTCGTAAGC TCCTTGGTCATAGATTGCCTCTAGATGCTCAGGAAGCCAAGTCAGAATGGTACAGCATTGTGGAAGGAGACCATGGTTTATGGAATGGCTTAACTAGGCC ATACAGCGAAACCATCCGAGCCTTTCTAGTCTATTTCCAGAACGAGATCATGCGAAGACCGAATGAATCATTTTGCTTTAGCAATGGCAGCATTGGGAAC TTCTTCTTTGCAGGAGCGCGCATATTTTTCCAGTCTTTAGACGCTGCGATCTTTCTGTTTTCTCGCGTTTCAGATATCCCCTCAGAAAGCTTAGTCCTTC CCGTGATCTCCACAAATGACCGGCTTACTTTGGGATGTGAATTGCAGGATGGCACTATTATTCGAGGACAAAACGAGATTTCTCATCCGACTATCGGTTC TATGCAACTCATTGATAAGGGATGTTGTTCAGCTCTTCCTTCGAGGATAAAGCGTGTATTCTACATGTCGAGTGAGGGTGGAGATTCACTTCACGAGGTC TTCCCATCAGTTAATGCTACTGTACTAGATCAGTTGACCAAAGTGGATTGCATCGTATATGCTATGGGCTCGCTTTTTACATCGATCTGTCCATCACTGG TGTTACGCGGCGTTGGGGAGAACATTTCGTCAAGGACGTGCCCCAAGGTGCTTTTGTTGAACGGTACGCTTGATCGCGAAACTATCGGGTTTTCTGCTTC GTGCTTCGTTACTGCCGTTACGGATGCCTTGAATCGCAGATACGGAGATCCTCATAACAGTCTTGAGAACCCGGCAAGTGAATATGTGAACACCATTCTA GTGCCTAATGGTGGTGCCATTCTCTTAGACATTCAAGTCCTAAACTCTCAAGGGATCTTTGACGTGATTGTCGTCGACTCGATCCATGATCCGAAAGTGG GCATCATCTTCGACCCTGCATCGTTGATCAACTCGCTAGCAGATTTGATTGGCAGACACATGAGTGCAAATGTGAATGAGTAA
AA sequence Show only first row Show all	>Lus10013927 pacid=23170128 polypeptide=Lus10013927 locus=Lus10013927.g ID=Lus10013927.BGIv1.0 annot-version=v1.0 MADGWLGPSSSSIAKTASSSLLLHSPNVPLRSVSMAATASQTQYAANSSSSVSSPRPTQPSLLVFSGGTAFNGVVEELKKLTTRVAHVLPVSDDGGSTAE IVRVLGGPAVGDIRSRCLRLSDQSTVEALAVRKLLGHRLPLDAQEAKSEWYSIVEGDHGLWNGLTRPYSETIRAFLVYFQNEIMRRPNESFCFSNGSIGN FFFAGARIFFQSLDAAIFLFSRVSDIPSESLVLPVISTNDRLTLGCELQDGTIIRGQNEISHPTIGSMQLIDKGCCSALPSRIKRVFYMSSEGGDSLHEV FPSVNATVLDQLTKVDCIVYAMGSLFTSICPSLVLRGVGENISSRTCPKVLLLNGTLDRETIGFSASCFVTAVTDALNRRYGDPHNSLENPASEYVNTIL VPNGGAILLDIQVLNSQGIFDVIVVDSIHDPKVGIIFDPASLINSLADLIGRHMSANVNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10013927 [exp]	0	1
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	3.5	0.8363
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	3.9	0.8591
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	5.8	0.8512
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	10.4	0.8490
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	11.0	0.8381
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	11.8	0.8330
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	12.3	0.8323
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	15.5	0.8399
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	18.2	0.7937
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	24.8	0.7840

Compare expression of checked genes

Lus10013927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.