Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29070 92 / 4e-24 Ribosomal protein L34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000989 [exp] 104 / 1e-26 AT2G34090 231 / 6e-71 maternal effect embryo arrest 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064800 [exp] 105 / 2e-29 AT1G29070 106 / 1e-29 Ribosomal protein L34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00468 [flax] [poplar] Ribosomal_L34 Ribosomal protein L34
Representative CDS sequence Show only first row Show all	>Lus10013928 pacid=23170076 polypeptide=Lus10013928 locus=Lus10013928.g ID=Lus10013928.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCAGTGTCGATTATGTCCCCTTCCCCACCGTCGTTCAGAGCAGCTCAACCTCCTTCTCGCCTTGTCGCCACCGCTGCTCTCTCCCAAAACA GAAATTTCTCCATCACCGCCGCCGCATCTCGCTCCGGCCTACTCCACTCTTCTTTCCTCTCTTCTCCCACTCCCGTTTCATCGTCTTTCTCGTCTTCCTT CTCAGGTTTGTCACTCGGAATTGGGGATTTTAACTCCGGCAGCAATGGGATAAACCGCCGCGGCGGCGGGGGAAGGTTTGTGGTGAGAGCTGGGAAGGCG GCGCTTTGCCTTACTAAAAGGAACAGGTCGTGCAAGTCTCTGGCGAGGACTCACGGATTCCGGCGACGGATGAAGACAACCGCCGGGAGGGCGATTTTGA AGCGCCGACGTGCTAAAGGTCGTAAGGTTCTCTGCACCAAGACCAATTCAAACAGTGGCAAAAAGAGAAACAGAGCTTGA
AA sequence Show only first row Show all	>Lus10013928 pacid=23170076 polypeptide=Lus10013928 locus=Lus10013928.g ID=Lus10013928.BGIv1.0 annot-version=v1.0 MAASVSIMSPSPPSFRAAQPPSRLVATAALSQNRNFSITAAASRSGLLHSSFLSSPTPVSSSFSSSFSGLSLGIGDFNSGSNGINRRGGGGRFVVRAGKA ALCLTKRNRSCKSLARTHGFRRRMKTTAGRAILKRRRAKGRKVLCTKTNSNSGKKRNRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	0	1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	1.7	0.9784
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	1.7	0.9814
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	2.0	0.9796
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	2.0	0.9780
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	2.2	0.9772
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	4.2	0.9731
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	4.6	0.9678
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	4.9	0.9674
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	5.2	0.9666
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	5.7	0.9608

Compare expression of checked genes

Lus10013928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.