Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 518 / 0 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 511 / 0 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 424 / 2e-148 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 421 / 2e-147 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 376 / 9e-130 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G14850 371 / 8e-128 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 370 / 2e-127 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G58600 334 / 1e-112 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 320 / 2e-107 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 278 / 7e-91 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000988 [exp] 693 / 0 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 550 / 0 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10033617 [exp] 429 / 2e-150 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 426 / 3e-149 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10039559 [exp] 365 / 2e-125 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 347 / 1e-117 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 343 / 3e-116 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10019774 [exp] 342 / 5e-116 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 342 / 6e-116 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064700 [exp] 535 / 0 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 520 / 0 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 445 / 7e-157 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106200 [exp] 442 / 7e-156 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 436 / 3e-153 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.003G201700 [exp] 412 / 1e-143 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 408 / 3e-142 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 387 / 3e-134 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 384 / 9e-133 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.004G135600 [exp] 367 / 4e-126 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10013929 pacid=23170055 polypeptide=Lus10013929 locus=Lus10013929.g ID=Lus10013929.BGIv1.0 annot-version=v1.0 ATGGCTCGCCAGCCGTCACTTCTTCTGTCGACAATCTTCCTCATTGTAATCTCCTGCTCCGCCACCACACCAGAAACAGAGCTATATAACAAAAACACAG AGCTCTACAATGTGACCAAGGCAATTGGAGGGAGGAGGCAGACGTCGACGTCGTGCAATCTCTTCGAGGGCAGATGGGCTTTCGACAATTCGTACCCGCT CTACGACTCGAAAGCCTGCCCTTTCATCGACGACGAGTTCGACTGCCTCAAGTTCGGCCGCCCCGACCGGCAGTACCTCAAGTACTCCTGGCGCCCCAAC TCCTGCAACCTCCCCAGGTTTGACGGCGTGGATTTCCTGAAGAGGATGGCGGGGAAGAAGGTGATGTTCGTTGGGGATTCGTTGAGTTTGAACATGTGGG AGTCGTTGTCGTGTATGATTCATGCGTCGGTGCCTAATGCCCGGACGGTTTACTCCAGGTCCGGCACGCTCCAAACCGTTAACTTTGTGGACTACAAGGT GACGGTGTACATGTACCGTACGCCGTATTTGGTGGACATAGTTCAAGAGAAGGTTGGCCGGGTTCTGGATCTGGGTTCGATCAAGGCTGGGAATGCGTGG AGAGGGATGGACGTGCTCATCTTCAACTCGTGGCATTGGTGGACTCATAAGGGTTCCAAATCTCAAGGATGGGACTATATCAGGGACGGTTCGTCGCTGA AAAAGGATATGGACAGGCTAGCCGCGTATACGACAGGGTTGAACACATGGTCTAGATGGGTGGATAATAATGTCGACCCAGCCAAGACTAAGGTCTTCTT CCAAGGGATTTCTCCTACCCATTATCAGGGACAGGACTGGAGTCAGCCAAAGAGGACTTGTAACGGAGAAGCGCAGCCCTTAGCCGGATCCAGTTACCCC GCAGGCGAACCCCCAGCTGCTGCAGTTGTGAACAAAGTGTTAATGACGATGAAAAGCCGAGTGTTTTTACTGGACATAACGACATTGTCCCAGTTGAGAA AAGATGCTCACCCGTCTACTTATGGAGGAGGAGGCGGCACAGATTGCAGCCATTGGTGTCTGCCAGGGTTGCCGGATACATGGAATCAGCTGCTTTATGC AGCTCTCATCTCCTGA
AA sequence Show only first row Show all	>Lus10013929 pacid=23170055 polypeptide=Lus10013929 locus=Lus10013929.g ID=Lus10013929.BGIv1.0 annot-version=v1.0 MARQPSLLLSTIFLIVISCSATTPETELYNKNTELYNVTKAIGGRRQTSTSCNLFEGRWAFDNSYPLYDSKACPFIDDEFDCLKFGRPDRQYLKYSWRPN SCNLPRFDGVDFLKRMAGKKVMFVGDSLSLNMWESLSCMIHASVPNARTVYSRSGTLQTVNFVDYKVTVYMYRTPYLVDIVQEKVGRVLDLGSIKAGNAW RGMDVLIFNSWHWWTHKGSKSQGWDYIRDGSSLKKDMDRLAAYTTGLNTWSRWVDNNVDPAKTKVFFQGISPTHYQGQDWSQPKRTCNGEAQPLAGSSYP AGEPPAAAVVNKVLMTMKSRVFLLDITTLSQLRKDAHPSTYGGGGGTDCSHWCLPGLPDTWNQLLYAALIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	0	1
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	1.0	0.8877
AT4G35320			unknown protein		Lus10022985 [exp]	5.3	0.8246
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	5.3	0.7831
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	6.2	0.8131
AT1G74530			unknown protein		Lus10023603 [exp]	6.3	0.7589
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	7.5	0.7611
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020207 [exp]	10.1	0.6758
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	13.2	0.7836
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	13.2	0.7332
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	13.6	0.7932

Compare expression of checked genes

Lus10013929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.