Plant FIBer expression Database

Lus10013930 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29040 223 / 1e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000987
[exp]
264 / 1e-91 AT1G29040 200 / 2e-66 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G064600
[exp]
242 / 3e-82 AT1G29040 229 / 3e-77 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09585 Lin0512_fam Conserved hypothetical protein (Lin0512_fam)
Representative CDS sequence
>Lus10013930 pacid=23170046 polypeptide=Lus10013930 locus=Lus10013930.g ID=Lus10013930.BGIv1.0 annot-version=v1.0
ATGAATTCAACGAGCTCATCCTTTCTACTACACTCCCCACGTCTTTCATCCTCCTTCAATCATCTTCCGCCGCCGATCACTCGATCCAATCCGACTTACT
TCCTGGTAACGTTACCGTCGTCTCGCTTACCAAATCGCCGATTGAAATCGGCTGTGGGGACGACTGTGATGGCTGCCGATGACCAAAGCGGAAGCGCGGG
CGTCAATCCCGATGGGCCCATGAAGCTGTTGTTCGTGGAGATGGGAGTCGGCTATGACCAGCACGGACAGGATATTAATGCTGCGGCGATGCGCGCATGC
AGGGACGCCATCACCTCTAATTCGATTCCGGCTTTCCGTAGAGGGTCGATTCCTGGGGTGTCAATGGAGCAAATGAAGTTGCAGATCAAACTGGGAGTCC
CTCATTCTCTGCAGCAATACTTGGATATCGAGAGGGTGAAGTCTGTGTTTCCTTATGGCAAGATTCTCAGCGTTGAAGTTGTTGACGGCGGACTATTATG
CTCAAGTGGGGTACTTGTAGAAGAAATGGGGGATAAGAACGACGACTGCTACATTGTTAATGCTGCTGTCTATATTGGGTACTAG
AA sequence
>Lus10013930 pacid=23170046 polypeptide=Lus10013930 locus=Lus10013930.g ID=Lus10013930.BGIv1.0 annot-version=v1.0
MNSTSSSFLLHSPRLSSSFNHLPPPITRSNPTYFLVTLPSSRLPNRRLKSAVGTTVMAADDQSGSAGVNPDGPMKLLFVEMGVGYDQHGQDINAAAMRAC
RDAITSNSIPAFRRGSIPGVSMEQMKLQIKLGVPHSLQQYLDIERVKSVFPYGKILSVEVVDGGLLCSSGVLVEEMGDKNDDCYIVNAAVYIGY

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29040 unknown protein Lus10013930
[exp]
0 1
AT4G10170 SNARE-like superfamily protein... Lus10002944
[exp]
3.5 0.9265
AT3G61113 Ubiquitin related modifier 1 (... Lus10041378
[exp]
3.9 0.9193
AT1G04555 unknown protein Lus10014458
[exp]
7.9 0.9214
AT1G79660 unknown protein Lus10024088
[exp]
8.2 0.8835
AT4G30360 ATCNGC17 cyclic nucleotide-gated channe... Lus10023203
[exp]
8.8 0.9024
AT3G58170 ATBET11, ATBS14... ARABIDOPSIS THALIANA BET1P/SFT... Lus10033868
[exp]
10.0 0.9120
AT4G22310 Uncharacterised protein family... Lus10011790
[exp]
10.4 0.9034
AT1G50940 ETFALPHA electron transfer flavoprotein... Lus10011156
[exp]
11.4 0.8975
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10021515
[exp]
12.3 0.9147
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Lus10002362
[exp]
15.9 0.8817

Lus10013930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.