Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 319 / 4e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 256 / 1e-75 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 212 / 4e-63 unknown protein AT1G48280 215 / 1e-62 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 54 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000986 [exp] 427 / 5e-144 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 374 / 2e-122 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 370 / 8e-121 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034264 [exp] 251 / 8e-73 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034382 [exp] 251 / 9e-73 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 205 / 3e-60 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 107 / 3e-25 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 71 / 1e-12 AT1G11070 330 / 2e-99 unknown protein Lus10036174 [exp] 62 / 8e-11 AT4G04980 236 / 6e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054900 [exp] 340 / 1e-109 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 315 / 4e-100 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 262 / 5e-78 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 259 / 3e-77 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 256 / 5e-75 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 234 / 4e-71 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 234 / 8e-71 AT1G07120 434 / 4e-151 unknown protein Potri.010G003100 [exp] 218 / 1e-63 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 59 / 6e-09 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 58 / 1e-08 AT4G04980 387 / 4e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013931 pacid=23170047 polypeptide=Lus10013931 locus=Lus10013931.g ID=Lus10013931.BGIv1.0 annot-version=v1.0 ATGGTCGCTGGCAAAGTCAGATCAGCAATGGGGTTCCAGAAATCACCGGCGGCTAGAGATAACAACCCACCACCACCGGCGCCGCCTCCTAAACCGGCGG TAAAGACAGGATTTTCTCGCTCCTTCGGCAACTACTTCCCACGCGCCTCCGCACAGGTCCAGCCCAAGCCTCCCGACGTGGCGGAGCTCCTCCGCCTCGT GGAGCAGCTCCGGGAACGAGAATCTAGACTCAAAACGGAGCTAATCGAGTTCAAGATTATGAGAGAGACCGCCGCCATTGTCCCCAAGCTGGAGGCGGAG ATCGAGGCGAGGAATTTTGAACTTGAGTCGGCGGAACAGAGGATTAAGGAGCTGGAAGAGGAGAAAGTTGATAGGGAGAAGAAGTTGAAGGACATGGAGG AGGAGATTCAGGCGTTGAGGAAAACGGCGTCCGATTGTAAAGAGAGGTTTCAGTTTCAGGGGTTGATGGAGCTGACGATGAAGTCGAGTCTGATTAGGAA TTTGAAGAAAGGGGAAGTACGATCATCGACGACGATGACGAAGTGGTGCTCTTCGGACGGCGTCGTTTTGGGGGAAAACGGTGCGTTGAAAGCGGAGGAA CGAGTTGTTGTACCGAGGCTGACCAGGTGTGACTCGGTTGAGCTCGCGGAGTCGACTCTGTCGAGTCTCCGATCTCGCGGCCCGAGAATCCCGAATCCGC CGCCGAAGCGGTGTTCTTCTTTCCCTTCTTCCGCCGTTGATCAATCTGCTACGTCGTCTGCACCGCCGCAGCCGCCGCCTCCTCCGCCCGCAGCAAAAAC AACGACGACTGCGGCGGCCGCCCCGGCGCCCCCCGCGCCCGCCCCGCCGCCCGCCGCCTCTTCCGCCGAAGGGGGCGAGAGGTGGTGCGGCGAAGGTGAG GCGAGTGCCGGAGGTGGTGGAGTTCTACCACTCTCTAATGCGGAGGGATTCGAGGAAGGATTCCGGCGTCGGAGGTGCTTCCACCGTCAGCTCCCGGGAC ATGATCGGAGAAATCGAGAACCGATCGACGCATTTACTAGCGGGGAGTTCATAAAGTTCCTGATCAGAGAAGTGGAAAGCGCTGCATTTACAGACATTGA AGAAGTAGTACCCTTCGTGAAATGGCTAGACGATGAGCTATCCTTTCTGGTGGACGAAAGGGCGGTGCTGAAGCACTTCGACTGGCCGGAACAGAAGGCT GATGCATTGAGGGAAGCTGCATTTGGGTACTGTGATCTGAGGAAGGTGGAACTAGAAGCATCATCTTTCAGGGATGTCGCTCGGGAGCATTGCTCTTCAG CTCTCAAAAAGATGCAGGCTTTGCTCGAAAAGTTAGAGCATGGTGTGTACAGTTTGTCAAGACTGAGAGAATCAGCAACGAAACGGTACAAGGAGTATCG GATTCCGATTGATTGGATGCTTGAATCAGCGCTTGTTAGCCAGATCAAATTGGCATCGGTCAAGCTGGCCATGAAGTACATGAAACGGGTGTCTGCAGAG CTTGAGTCTGTCGATAGTCCCGCTGAAGAAGAGGAGCTCATCGTCCAAGGTGTTCGCTTTGCCTTCCGAGTCCATCAGTTTGCGGGAGGGTTTGACGGGG AGACGATGAGGGCGTTCCAGGAGTTGAGAGATAAAGCGAGGCCGGTTTGCAGCAGCAGATGCACAGCTTGCTAA
AA sequence Show only first row Show all	>Lus10013931 pacid=23170047 polypeptide=Lus10013931 locus=Lus10013931.g ID=Lus10013931.BGIv1.0 annot-version=v1.0 MVAGKVRSAMGFQKSPAARDNNPPPPAPPPKPAVKTGFSRSFGNYFPRASAQVQPKPPDVAELLRLVEQLRERESRLKTELIEFKIMRETAAIVPKLEAE IEARNFELESAEQRIKELEEEKVDREKKLKDMEEEIQALRKTASDCKERFQFQGLMELTMKSSLIRNLKKGEVRSSTTMTKWCSSDGVVLGENGALKAEE RVVVPRLTRCDSVELAESTLSSLRSRGPRIPNPPPKRCSSFPSSAVDQSATSSAPPQPPPPPPAAKTTTTAAAAPAPPAPAPPPAASSAEGGERWCGEGE ASAGGGGVLPLSNAEGFEEGFRRRRCFHRQLPGHDRRNREPIDAFTSGEFIKFLIREVESAAFTDIEEVVPFVKWLDDELSFLVDERAVLKHFDWPEQKA DALREAAFGYCDLRKVELEASSFRDVAREHCSSALKKMQALLEKLEHGVYSLSRLRESATKRYKEYRIPIDWMLESALVSQIKLASVKLAMKYMKRVSAE LESVDSPAEEEELIVQGVRFAFRVHQFAGGFDGETMRAFQELRDKARPVCSSRCTAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	0	1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	1.7	0.9588
AT3G57060			binding (.1.2)		Lus10039012 [exp]	3.2	0.9519
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	3.9	0.9512
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	5.0	0.9449
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	5.3	0.9470
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	6.7	0.9250
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	6.9	0.9240
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	7.9	0.9393
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	8.1	0.9403
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	9.6	0.9006

Compare expression of checked genes

Lus10013931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.