Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 420 / 3e-146 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 354 / 2e-120 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 338 / 6e-114 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 260 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 258 / 2e-81 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 254 / 3e-80 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 245 / 1e-76 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 220 / 5e-67 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 160 / 2e-44 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 156 / 2e-44 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000985 [exp] 551 / 0 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 384 / 4e-132 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 323 / 2e-108 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 321 / 8e-108 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 284 / 5e-93 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 280 / 2e-91 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 225 / 6e-70 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 218 / 3e-67 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 216 / 4e-65 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054800 [exp] 481 / 2e-170 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 471 / 3e-166 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 342 / 6e-116 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 317 / 5e-106 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 310 / 3e-103 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 284 / 5e-93 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 275 / 2e-88 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 269 / 5e-86 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 262 / 2e-83 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 220 / 8e-67 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10013932 pacid=23170039 polypeptide=Lus10013932 locus=Lus10013932.g ID=Lus10013932.BGIv1.0 annot-version=v1.0 ATGGATAACTCCGGCGAGGGAAAAACCAACGCCGGCGGCGGAGGAATAGCAAAGAGATGGAAGCAACTGAGCGGGAAAGACAACTGGAAAGGCTTACTCG ACCCACTCGACATCGACCTCCGGCGGTACATAATCCACTACGGCGAGATGGCTCAGTCCACCTACGACGCCTTCAACACCCAAAAGGCCTCCAAGTCAAT GTCGAGGGAGGCGTGGAGCAAGGAGTCAAACTGGATGGGGTACGTGGCGGTGGCGACCGACAAGGGGGCGGCGGCGCTGGGGAGGAGGGACATCGTGGTG GCTTGGAGAGGGACGGTGCAGACTTTGGAATGGGTCAACGATTTGGACTTTCTTTTGATTTCCGGCGATAAAATTTTTGGGAAGAAGAGTAAGATTAAGG TTCATCAAGGTTGGTATTCCGTTTATACCTCTGACGACGCCCGGTCGCCATACAATACCAGCAGCGCCAGAGACCAGGTAATGGATGAGATAAGAAGACT AGTGGAAGAGTACAAGGACGAGGAAATCAGCATAACGGTAACCGGCCACAGCCTGGGAGCAGCAGTCGCAACCCTAACCGCAATCGACATAGTAATCAAC GGGTTCAACCGCCGGTCCAACCATTCCTCCACTCACTCTCACAAACCGCCCAGCTGTCCGGTCACGGCCATAGTCTTTGCGAGTCCACGTGTCGGTGACT CAGCATTCAAGAAACTCTTTGCCCAATCGAAAGACCTTCATGCCTTGCGTGTAGGCAATGCGATGGACGTGGTCCCCAACTACCCGTTGATTGGCTACGA GGTGGTCGGCGAGGAATTGGGGATCGATACAAGGAAGTCGAAGTACTTGAAGGGGCCCGGGAACCTGTCCGCGTGGCATAATTTGGAGGCGTATTTGCAT GGCGTGGCGGGGACCCATGGTGATGACGGGGATTTCGAGCTGGTGGTGGAGAGGGACGTGGCGCTTTTGAATAAGTCGATGGATGCCTTGAAGGACGAAT ATTTGGTTCCGGTTTCGTGGCGGGTTCTGAAGAATAAAGGGATGGTTCAAGATTCGGATGGATCGTGGGTGTTGAATGATCATGAACGAGATGTTGAGAC ATGA
AA sequence Show only first row Show all	>Lus10013932 pacid=23170039 polypeptide=Lus10013932 locus=Lus10013932.g ID=Lus10013932.BGIv1.0 annot-version=v1.0 MDNSGEGKTNAGGGGIAKRWKQLSGKDNWKGLLDPLDIDLRRYIIHYGEMAQSTYDAFNTQKASKSMSREAWSKESNWMGYVAVATDKGAAALGRRDIVV AWRGTVQTLEWVNDLDFLLISGDKIFGKKSKIKVHQGWYSVYTSDDARSPYNTSSARDQVMDEIRRLVEEYKDEEISITVTGHSLGAAVATLTAIDIVIN GFNRRSNHSSTHSHKPPSCPVTAIVFASPRVGDSAFKKLFAQSKDLHALRVGNAMDVVPNYPLIGYEVVGEELGIDTRKSKYLKGPGNLSAWHNLEAYLH GVAGTHGDDGDFELVVERDVALLNKSMDALKDEYLVPVSWRVLKNKGMVQDSDGSWVLNDHERDVET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	2.4	0.9783
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	4.2	0.9735
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	4.2	0.9663
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	4.5	0.9654
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	4.5	0.9759
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	7.1	0.9704
					Lus10006423 [exp]	7.3	0.9700
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10001599 [exp]	8.0	0.9581
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	8.1	0.9653
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	8.2	0.9725

Compare expression of checked genes

Lus10013932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.