Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11270 72 / 8e-14 F-box and associated interaction domains-containing protein (.1.2.3) AT1G47790 73 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT1G33530 67 / 1e-11 F-box family protein (.1) AT1G32420 65 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT4G38870 63 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT2G15640 62 / 4e-10 F-box family protein (.1) AT2G02030 61 / 5e-10 F-box family protein (.1) AT2G16450 59 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT3G10240 59 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT5G62660 58 / 4e-09 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011197 [exp] 460 / 7e-159 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 453 / 5e-157 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 430 / 1e-145 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 395 / 1e-133 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 390 / 9e-133 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 390 / 1e-132 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 346 / 3e-116 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 322 / 4e-108 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10022939 [exp] 297 / 7e-98 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 80 / 6e-16 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 70 / 1e-12 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.007G074084 [exp] 68 / 3e-12 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.013G093100 [exp] 67 / 4e-12 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 67 / 7e-12 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 66 / 1e-11 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 66 / 2e-11 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.002G223000 [exp] 64 / 6e-11 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.019G062900 [exp] 64 / 7e-11 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.010G207500 [exp] 64 / 9e-11 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10013934 pacid=23170126 polypeptide=Lus10013934 locus=Lus10013934.g ID=Lus10013934.BGIv1.0 annot-version=v1.0 ATGATGGATCAAATTGAGAGAGAAAAGGAAGTAGAAGGACGGGATTTTAGTTTGAAACCTCATGTTTGGACAAAAAAGAAGCATCGTGCTGATGATCTAG TGGTTACCCAGATACTTAGCAGACTCCCAGCCAAAACACTTATGCGGTTCAAGTCCATCCGTAAAGGCTGGCAATCGATTATCGAACAAGATTCTCACTT TATCAATTTACACCGTACCCATTCACAAGCACGCCTCCCCCGTCTATTGATTATCGTCCCAAATCGGAAAACAAACGAAGAAAGTAGGGCTTGTTTTAAT TTATTGTCAGCCGATCTGGACTGTAACGGTCTGGACTGTAACGGTAGCGGACGTGTTAGAGGAGCCAGTATTCGAAGCGCAATGAGTGTGAGAGTGCCAA GTCCAACTGCTGAGGTTTTCGGACCTGTTAGGGGATTGCTTTGTTTCGTTGACGTTGCCAACTTTGATGTACTGATTTACAATGTCAGCACTGGACAAGC TGTCACACCATGGATAAGATCAAGCGTGAGTCTAAAGAAGCTTCCCTTCAAATATCCAGTATGTGAATTTGGATTTGATCCTAATACTGGAGAACATAAA GTTATCTTCGTGTGGCATGATTCTCCAAAGTTTCCGGGAACTCCTATTGCATCAGCTTGTGAGGTCTTGACGGTAGGGGTTGACACTAGTTGGAGAATAA TTCATGCTATACCTACATGTAGAGTCTTCAGATGTAAGAGTATTTACGCCAAGAGTATTTACGCCAATGGTTCCATCTATTGGTTGTTCAACAAGCGTGA AACGTGGGGTTATTCTGAATCCTTAGTGGTATTTGACATTGGACCTGAGAAGTTTAGGACGATCACAATCCCCATATTCACACGTTCCATGCGTCAGGAG TTCCCCAAACCCAAGTTAATTGAACTGGATGGGTGTCCAACCATAGTGCGTTTAGACACCCCAGGAGCGGAAATGCAGACGCTATGGAAATTTGATGATC GTAATAAGAATGAAACATCGGATACTACCACTCTTAGCAGAAGTGAAAGCGAAGATTGGACTGCAGTTAGTATTAAACTGCCTTTATATATACCTCCCGA GGATGTTACATTTCACCCGATACCTGGGAAAGACCAGATTATTTTCGTGGAATCCTATAATAAATGGCTTCCGGGGCATTTCGAGCGTGCCTGCTTTTAC TCTTACAACAGGGTAAACAAGACTTTCAGCAAGTTTGAAATCCGAGGGATTCCCTCCCTTCCAGAACATTCCGGAAGTCGTTGTAAATTTTTCATAGAAG ATCTTTTCCATGCTGCTGAGGATAAAAACACATTGAAGAACCCGAGTTGA
AA sequence Show only first row Show all	>Lus10013934 pacid=23170126 polypeptide=Lus10013934 locus=Lus10013934.g ID=Lus10013934.BGIv1.0 annot-version=v1.0 MMDQIEREKEVEGRDFSLKPHVWTKKKHRADDLVVTQILSRLPAKTLMRFKSIRKGWQSIIEQDSHFINLHRTHSQARLPRLLIIVPNRKTNEESRACFN LLSADLDCNGLDCNGSGRVRGASIRSAMSVRVPSPTAEVFGPVRGLLCFVDVANFDVLIYNVSTGQAVTPWIRSSVSLKKLPFKYPVCEFGFDPNTGEHK VIFVWHDSPKFPGTPIASACEVLTVGVDTSWRIIHAIPTCRVFRCKSIYAKSIYANGSIYWLFNKRETWGYSESLVVFDIGPEKFRTITIPIFTRSMRQE FPKPKLIELDGCPTIVRLDTPGAEMQTLWKFDDRNKNETSDTTTLSRSESEDWTAVSIKLPLYIPPEDVTFHPIPGKDQIIFVESYNKWLPGHFERACFY SYNRVNKTFSKFEIRGIPSLPEHSGSRCKFFIEDLFHAAEDKNTLKNPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11270			F-box and associated interacti...		Lus10013934 [exp]	0	1
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	4.5	0.8354
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	9.3	0.8269
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10004642 [exp]	14.0	0.7868
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	14.3	0.8236
AT3G50790			esterase/lipase/thioesterase f...		Lus10017332 [exp]	15.0	0.7665
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	15.6	0.8249
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	17.8	0.8317
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	18.1	0.7996
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	20.8	0.8029
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	23.5	0.8085

Compare expression of checked genes

Lus10013934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.