Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 337 / 2e-113 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 302 / 8e-100 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 295 / 9e-97 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 232 / 3e-71 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 227 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 222 / 2e-67 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 221 / 3e-67 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 211 / 5e-63 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 170 / 2e-49 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 165 / 2e-46 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013936 [exp] 576 / 0 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 332 / 3e-111 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 325 / 2e-109 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 285 / 1e-94 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 232 / 2e-72 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000983 [exp] 213 / 5e-69 AT2G31100 85 / 2e-20 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 221 / 6e-68 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 219 / 1e-67 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 213 / 5e-65 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026500 [exp] 413 / 1e-143 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 399 / 6e-138 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 363 / 1e-123 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 358 / 9e-122 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 349 / 3e-118 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 241 / 1e-74 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 237 / 2e-73 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G101800 [exp] 234 / 2e-73 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 234 / 3e-72 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 221 / 5e-67 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10013935 pacid=23170097 polypeptide=Lus10013935 locus=Lus10013935.g ID=Lus10013935.BGIv1.0 annot-version=v1.0 ATGGCCAGTAGCGTAGCGAATAACTGGAAGAAGCTGAGCGGCGAGGACAACTGGGACGGCCTCATGGACCCACTCTCGCCGGAGTTCCGCCGCTACCTAA TCCACTACGGTGAGCGGGTGGAGGCGGTCAATGCGGCATTCAACTACGAGACCAAGTCCAAGGCCTACGGCTTCAGCCTCCACCCGCCGGAGGGCTTCTT CAGCAACGTCAACCTCCAGAACGGTAACCCTTACAAGTACACGGTCACCAAGTTCTTCTACGCCACCTCCGAGTTCAAGCTCGGAGACTGGCTCCTGGGT GGTGGGTCTGCCTGGATGGGGTACGTGGCGGTCTCCACCGACGCGGGGAAGGATATCCTCGGGAGGCGCGACATCATGGTGTGCTGGCGCGGGACCATCA CTAGCATGGAGTGGTTTCAGGATGTGAATTTCCCAGCTGTGTCGGCCTCTGAGATCTTTGGCACGAACCATCATCCCAAGGTTCATCAGGGATTTCTAAG CGTTTACTCGCACAGTGTTCCTGATTCAGCGTATAATAAGATCTCGGCTAGGGATCAGGTCTTAGCCGAGGTCAGGAGGCTGGTGGACTTGTACAAGGAT GAGGAGGTTAGTATCACTGTGGCGGGACACAGTCTGGGAGCTTCTTTGGCCACGATTAATGCGGTCGATATTGTGGTCAACAACTACCACAAACCGACCG GTTCGACCACTGGTTGCATGGTCACGGCGTTCGTGTTTGCTAGCCCTCTGGTGGGAGACTTTGGGTTCAGGAGCCTGTTCAAGGAGCAAAAGGACCTGAG GGTTCTGAGGATAAGGAACTTTCAGGATGCGGTTGTGCCCAATCTTCCTCCAAAGATTTTTGGATTTTTTGAGGTTGGGAGCGAGTTGTTGATCCATTCG TTCTCGCCCTACCTAAAGCCGTTGGTGAACCCTCATAGCTTGGAGGTGTACATGCATGGTGTAGCCGGGGTGGATGGCTTCGGGAAGTTCAAGCTGGTGG TTCAGAGGGATGTTTCGTTGCTGAATAAGTGGCTCGATGCACTTAAGGACGAGTACAAAGTTCCGAAAGAGTGGTGGATCACGAAGAACCGGACCATGGT TCAAAACGACAGCGGTGTGTGGATGTTGCAGGAGGTTATGCCGCCACCTCCGGTGGCTCATGTTTGA
AA sequence Show only first row Show all	>Lus10013935 pacid=23170097 polypeptide=Lus10013935 locus=Lus10013935.g ID=Lus10013935.BGIv1.0 annot-version=v1.0 MASSVANNWKKLSGEDNWDGLMDPLSPEFRRYLIHYGERVEAVNAAFNYETKSKAYGFSLHPPEGFFSNVNLQNGNPYKYTVTKFFYATSEFKLGDWLLG GGSAWMGYVAVSTDAGKDILGRRDIMVCWRGTITSMEWFQDVNFPAVSASEIFGTNHHPKVHQGFLSVYSHSVPDSAYNKISARDQVLAEVRRLVDLYKD EEVSITVAGHSLGASLATINAVDIVVNNYHKPTGSTTGCMVTAFVFASPLVGDFGFRSLFKEQKDLRVLRIRNFQDAVVPNLPPKIFGFFEVGSELLIHS FSPYLKPLVNPHSLEVYMHGVAGVDGFGKFKLVVQRDVSLLNKWLDALKDEYKVPKEWWITKNRTMVQNDSGVWMLQEVMPPPPVAHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013935 [exp]	0	1
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	12.6	0.9039
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	19.0	0.8839
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	19.5	0.8293
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	21.3	0.8940
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	24.5	0.8152
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	25.1	0.8871
					Lus10000100 [exp]	28.2	0.8918
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	29.8	0.8854
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	31.5	0.8852
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	33.3	0.8910

Compare expression of checked genes

Lus10013935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.