Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 345 / 2e-116 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 302 / 1e-99 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 292 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 257 / 8e-81 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 241 / 9e-75 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G42690 238 / 1e-74 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 235 / 2e-72 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 218 / 8e-66 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 177 / 4e-51 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 176 / 2e-50 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013935 [exp] 575 / 0 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 344 / 2e-116 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 329 / 8e-111 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 275 / 2e-90 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 250 / 1e-79 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 237 / 2e-74 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 216 / 4e-66 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10033619 [exp] 202 / 6e-63 AT4G18550 235 / 1e-75 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 209 / 2e-62 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026500 [exp] 432 / 7e-151 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 424 / 1e-147 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 374 / 4e-128 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 370 / 1e-126 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 355 / 7e-121 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 249 / 3e-78 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 249 / 5e-78 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 246 / 5e-78 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 244 / 3e-76 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G057900 [exp] 226 / 7e-69 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10013936 pacid=23170088 polypeptide=Lus10013936 locus=Lus10013936.g ID=Lus10013936.BGIv1.0 annot-version=v1.0 ATGGGCAGCATCGCCGTCAACTGGAAGAAGCTGAGCGGGCAGGACAACTGGGACGGTCTGACCGACCCACTTGACCCGGACTTCCGCCGCTACCTCATCC ACTACGGCGAGCGCCTCCAGGCCGTCTACGACGCCTTCAACGGCGAGAAGCTGTCCAAGGCCTACGGGTACAGCCGGTACCCTCCCGAGGACTTCTACAC CAGCGTCTACCTTCAGAACGGCAAGCCGTACAAGTACCAGATCACAAAGTTCTTCTATGCCTCATCGGAGTTCACCCTCGGCGACTGGATCGTGGCCGGA GGGTCGGCATGGATGGGGTACGTGGCGGTGTGCACGGAGGAAGGGAAGTCGATATTGGGTAGGAGGGACATCATGGTTTGTTGGAGGGGAACGTTGACCA ACATGGAGTGGTTCCAAGACGTGAATTTTCCGGCGGTGTCGGTGTCGGAAGTGTATGGCAAGGATCATAATCCGAAGGCTCATCAAGGGTTCTACAGTTG CTATACTCATAAGAACCCTGAGTCCACCTACAACAAGAGCAGTGCTCGTGAGCAGGTTCTGTCGGAGGTAAGAAGGCTAGTAGACAAATACCGCGACGAG GAAACAAGCATAACCGTAGTAGGCCACAGCTTGGGAGCCTCGTTAGCCACCCTAAATGCTACCGACATCGCGGCCAACAACTACAACAAACCGACTGGTT CGACCACCGGTTGTTTGGTCACGGCGTTTGTCTACGCTAGCCCTTTAGTTGGCGACTTGGGTTTCCTCAACATGTTCAACACATTGACCGACCTCCGCCT GCTCCGAATCCGAAACTTCCCTGACCCGGTTCCCACGGTCCCACCAAAGCTTTTCGGGTTCTGGGAGGTGGGGAAGGAGCTGTTGATCTACATCTTCTCC CCGTACTTGAAACCTTTGCTGAACCCGCACAACTTGGAGCTTTACATGCACGGGGTTGCAGGTTACAACGGACTGACCGGGTTCAAGCTCGTGGTCGAGA GGGACATTGCGTTGGTTAACAAAGGTGAGGACCATCTCAAGGATGAGTACAACGTTCCTCCCAAGTGGTGGAATGAGAAGAACAAGGCTATGTACCAGTT GGACGATGGTTCGTGGGGGATGCGCGATTATGTTCCTCCCCCACCTGAAGATGTCGTCCTGTAA
AA sequence Show only first row Show all	>Lus10013936 pacid=23170088 polypeptide=Lus10013936 locus=Lus10013936.g ID=Lus10013936.BGIv1.0 annot-version=v1.0 MGSIAVNWKKLSGQDNWDGLTDPLDPDFRRYLIHYGERLQAVYDAFNGEKLSKAYGYSRYPPEDFYTSVYLQNGKPYKYQITKFFYASSEFTLGDWIVAG GSAWMGYVAVCTEEGKSILGRRDIMVCWRGTLTNMEWFQDVNFPAVSVSEVYGKDHNPKAHQGFYSCYTHKNPESTYNKSSAREQVLSEVRRLVDKYRDE ETSITVVGHSLGASLATLNATDIAANNYNKPTGSTTGCLVTAFVYASPLVGDLGFLNMFNTLTDLRLLRIRNFPDPVPTVPPKLFGFWEVGKELLIYIFS PYLKPLLNPHNLELYMHGVAGYNGLTGFKLVVERDIALVNKGEDHLKDEYNVPPKWWNEKNKAMYQLDDGSWGMRDYVPPPPEDVVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	6.2	0.8666
					Lus10018646 [exp]	9.9	0.8190
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10033885 [exp]	10.8	0.8221
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10029607 [exp]	12.6	0.7935
AT1G62422			unknown protein		Lus10031521 [exp]	21.0	0.8661
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	21.5	0.7770
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	25.0	0.8363
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	25.2	0.8420
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	25.4	0.8303
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	27.3	0.8015

Compare expression of checked genes

Lus10013936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.