Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18540 478 / 9e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008576 [exp] 695 / 0 AT4G18540 551 / 0.0 unknown protein Lus10036093 [exp] 633 / 0 AT4G18540 621 / 0.0 unknown protein Lus10036092 [exp] 175 / 3e-52 AT4G18540 120 / 1e-32 unknown protein Lus10000522 [exp] 99 / 2e-24 AT4G18540 90 / 8e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054500 [exp] 653 / 0 AT4G18540 593 / 0.0 unknown protein Potri.011G064300 [exp] 640 / 0 AT4G18540 547 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013937 pacid=23170058 polypeptide=Lus10013937 locus=Lus10013937.g ID=Lus10013937.BGIv1.0 annot-version=v1.0 ATGGGCAGCCCAGTAAGATTCTTAAGTTGCAGAGGAGTCTCCTTCGAGATCAAACCCCGCCACGCCGATCCCTTTGCCATCTCTGACGAACAACAACAAG ACCACCAACTCCATAAACACAACCAAATTACCACTGTGTCTCTGCACGCCAGGCGCTTCTCTGTTTCCTCCTGGATCCATGGCCCACGCTCCTCCAAAGT GGGCCCCTCCTATGATCTCCTCCACCACCGCTCTGTCAGCATGGCCAGCAGCACCCACTTCTGCGACCTCGACCGAGACGATGACGTGGCAGAATTAGAT GTGGAAGACGGGAAAAAAACAGAGCAGCAGCCTCTGCCACGCGCCGCCGTGGCTGAGAAGAAGGAGAATTCATCGAGGCTGTCGATCATACTACTCGACC AAGGGATTTTGACGGTTTACAAGCGGCTTTTCGCGATTTGCTTCACGTTAAACGTCGTCGTATTGGTGACGGCGGCTGCTGGGTATTTCGAGTACGCGAG AGACAGAGCTGCTCTGTTTTCCATTGGGAATATATTCGCTCTTACTCTGTGTAGGAGCGAGCTCTTCTTGCGGGTAGTGTTTTGGGCCACGGTTAAGTTA TTGGGCCGCTCGTGGGTCCCGAATCGGGTCAAAACTTCGGCCACATCCTTGCTTCAGAGTCTCGGTGGGGTTCATAGTGGGTGTGGGGTGTCCTCCGTGG CGTGGTTGGTTTACAGTTTGATCCTTACTCTCAAGGATCGGGCGAATATGTCGTCGGAGATTGTTATAGTATCGTCGGTGATTCTTGTGCTTGTCTCTTT GTCGTGTCTCGCCGCATTTCCTCTGGTTCGACATCTGCACCATAATGTGTTCGAGAGGATTCACAGGTTTGCAGGATGGGCGGCTTTGTGCCTTTTGTGG TGTTTTGTTATGCTTACATTCTCTTATGACCCCAAAACTACGTTGTATCGTACCCAAATAGGTGCAAAACTAGTCGCCTCGCAAGAAGTTTGGTTCACAC TGGGCATCACCTTACTGATTATAATCCCATGGTTGACCGTGAGGAAGGTACCGGTAAGCACCTCATCTCCGTCCGGCCACGCGACAATAATCAAATTCCA GGGAGGAGTCAACCCTGGAATCCTAGGCAGAATCAGCACGTCTCCTCTATCAGAATGGCACGCCTTCGGGATCATCTCCGATGGGAAAACCGAGCACATG ATGCTCTGTGGTGCAGTAGGTGACTTCACGAAATCTCTAGTGTCCAACCCGCCAACCCATTTGTGGGTTCGACAGGTCCACTTCGCGGGGCTTCCCTACT TGGTGAACATGTACAACAGTGTCTTGCTAGTCGCAACCGGCTCGGGAATCTGCGTGTTCCTGTCCTTCCTATTGCAACCTTGCAAGGCCAATGTATGTGT GCTTTGGATAGCGAAAGGAATCGAACAGAATTTCGGGCAAGAGATTAAGGAAATGATCATGAGTAGGCATCCACAAGACAAGAAGGTGATTGTACACGAT ACGGCTGTGATGGGACGTCCCGATGTGTCGGAAATGAGCGTGGATGCTGCCAAAAAATGGGGTGCTGAAGTCGTCGTTGTTACGAGCAATCCTGAAGGGA GTCGAGACGTTGTCAATGCATGCAAAGGTGCTGGAGTTCCGGCTTTCGGTCCGATTTGGGACTCCTAA
AA sequence Show only first row Show all	>Lus10013937 pacid=23170058 polypeptide=Lus10013937 locus=Lus10013937.g ID=Lus10013937.BGIv1.0 annot-version=v1.0 MGSPVRFLSCRGVSFEIKPRHADPFAISDEQQQDHQLHKHNQITTVSLHARRFSVSSWIHGPRSSKVGPSYDLLHHRSVSMASSTHFCDLDRDDDVAELD VEDGKKTEQQPLPRAAVAEKKENSSRLSIILLDQGILTVYKRLFAICFTLNVVVLVTAAAGYFEYARDRAALFSIGNIFALTLCRSELFLRVVFWATVKL LGRSWVPNRVKTSATSLLQSLGGVHSGCGVSSVAWLVYSLILTLKDRANMSSEIVIVSSVILVLVSLSCLAAFPLVRHLHHNVFERIHRFAGWAALCLLW CFVMLTFSYDPKTTLYRTQIGAKLVASQEVWFTLGITLLIIIPWLTVRKVPVSTSSPSGHATIIKFQGGVNPGILGRISTSPLSEWHAFGIISDGKTEHM MLCGAVGDFTKSLVSNPPTHLWVRQVHFAGLPYLVNMYNSVLLVATGSGICVFLSFLLQPCKANVCVLWIAKGIEQNFGQEIKEMIMSRHPQDKKVIVHD TAVMGRPDVSEMSVDAAKKWGAEVVVVTSNPEGSRDVVNACKGAGVPAFGPIWDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18540			unknown protein		Lus10013937 [exp]	0	1
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	3.0	0.7896
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	11.2	0.8037
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	18.7	0.8033
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023945 [exp]	18.8	0.7591
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	22.8	0.7888
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	30.4	0.7826
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	31.5	0.7594
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	37.5	0.7762
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	40.1	0.7798
AT3G20898			unknown protein		Lus10014904 [exp]	44.3	0.7632

Compare expression of checked genes

Lus10013937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.