Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28590 327 / 1e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 324 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28580 321 / 2e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 320 / 5e-107 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28600 317 / 5e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28610 313 / 1e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 310 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 307 / 6e-102 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28670 305 / 4e-101 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 298 / 1e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000523 [exp] 585 / 0 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 354 / 2e-120 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 301 / 5e-100 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 261 / 1e-82 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10019947 [exp] 218 / 7e-68 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 194 / 2e-55 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012644 [exp] 172 / 7e-50 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034763 [exp] 171 / 2e-49 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10033302 [exp] 159 / 1e-44 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 368 / 4e-126 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 290 / 9e-96 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 209 / 4e-64 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G064100 [exp] 199 / 3e-62 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.005G024966 [exp] 192 / 2e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 192 / 2e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 191 / 4e-57 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 189 / 3e-56 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.015G089700 [exp] 180 / 7e-53 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 176 / 2e-51 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013938 pacid=23170096 polypeptide=Lus10013938 locus=Lus10013938.g ID=Lus10013938.BGIv1.0 annot-version=v1.0 ATGGCTCTTCCCATCACTGCCGCCGCCGTCAAGACCCTCCTCCTCTTCCTCTCCATCTCATCCGCCGCTGCCGGCACCACAAGTCCATGCTTCACTTCCC TCTTCAGCTTCGGCGACTCAATCACTGACACCGGCAACCAAATGCTCCTCGCCACTCCAGACAACCTCCCCCACTGCTGCTTCTCCCCATACGGCGAGAC CTTCTTCGGCGGGCCCTCCGGCCGATGCTCCGACGGCCGCCTCATCGTCGATTTCATTGCTGAGGGGCTGGGACTGCCGTTGCTGACGCCATATCCCGGC GAGGTGAAGAGCAATAACTTCCCGCTGGGAGCGAACTTCGCCGAAGGAGGAGCGACGGCGCTTGATTTCCACTTCCTCGCCGAGAGAGGGATCTATAACA CGCATACGAATCTATCTCTGCAAGTTGAGATCGATCGGTTCAAGGAGTTGTTGACCAGCATCTGCTCATCTCCCTCTGAGTGCAAGGAGTACCTCAGCAA GTCTCTAATCTTGATGGGAGAGATCGGAGGGATCGATTACAACAGAGCGTTCTTCGAAGATGTTCCATTTCAGAAGATCCTGGAGATCGTACCTTATGTC GTGGCCGAGATCGGAAAGGCTGTCGAGGAGCTGGTTGAATTAGGGGCAGTGACGATTTTGGTCCCCGGAAATCTGCCGATCGGATGCTGGCCGGGTTACC TTACGAAATTCTGGAGCCCTAACAAGGAAGATTACGATCCTCTGAGCGGGTGTCTCGTTCGGTACAACAATTTCGCTCAGCATCACAACGACCTTCTCCA GAAGGAAATTGTTCGACTCAGGGAGATTCATCCTCGTACCAACATCATGTACGGCGACTACTATGCATCTGCCACTCGATTCCATCGACACCCTGCAAAT TTCGGTTTCACCGGCTCGGCGGTGGTAGCGTGTTGTGGAGGAGGAGGTCCGTACAACTACAACGAAACTCTGATTTGCGGGAATCCTGGATCCGTGGCAT GTGCAAAGCCGTCGACTTATGTTAATTGGGACGATCATCATTTTACGGAAGCGGCCTATAGAATAGTGGCTAAGGATGTGTTGGAAGGTTCGTTTTCGAT CCCTCGATTCAATGCTTCGTGTCTCGTGCGTCGGGCGAGCGATGTCGGTGGACATTCCACTTACTAG
AA sequence Show only first row Show all	>Lus10013938 pacid=23170096 polypeptide=Lus10013938 locus=Lus10013938.g ID=Lus10013938.BGIv1.0 annot-version=v1.0 MALPITAAAVKTLLLFLSISSAAAGTTSPCFTSLFSFGDSITDTGNQMLLATPDNLPHCCFSPYGETFFGGPSGRCSDGRLIVDFIAEGLGLPLLTPYPG EVKSNNFPLGANFAEGGATALDFHFLAERGIYNTHTNLSLQVEIDRFKELLTSICSSPSECKEYLSKSLILMGEIGGIDYNRAFFEDVPFQKILEIVPYV VAEIGKAVEELVELGAVTILVPGNLPIGCWPGYLTKFWSPNKEDYDPLSGCLVRYNNFAQHHNDLLQKEIVRLREIHPRTNIMYGDYYASATRFHRHPAN FGFTGSAVVACCGGGGPYNYNETLICGNPGSVACAKPSTYVNWDDHHFTEAAYRIVAKDVLEGSFSIPRFNASCLVRRASDVGGHSTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10013938 [exp]	0	1
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	4.0	0.8803
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	4.5	0.8878
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	15.1	0.8452
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	15.5	0.8379
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	16.1	0.8461
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	19.4	0.8433
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	23.2	0.8389
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	26.0	0.8431
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10037531 [exp]	29.3	0.8321
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	30.4	0.7883

Compare expression of checked genes

Lus10013938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.