Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 169 / 4e-53 SGNH hydrolase-type esterase superfamily protein (.1) AT3G11210 104 / 2e-27 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 89 / 3e-21 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000525 [exp] 343 / 1e-121 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 174 / 7e-55 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 103 / 1e-28 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 107 / 2e-28 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 106 / 3e-28 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 103 / 4e-27 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 103 / 1e-26 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 79 / 2e-17 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053800 [exp] 268 / 5e-92 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 266 / 4e-91 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 180 / 2e-57 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 107 / 1e-28 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 107 / 1e-28 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 103 / 3e-27 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 102 / 5e-27 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 89 / 1e-21 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 88 / 2e-21 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013941 pacid=23170040 polypeptide=Lus10013941 locus=Lus10013941.g ID=Lus10013941.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGAAGGTGTTTCCGGCACCGACGACGACGATGGCGACGTGGGCGGTGACGGTGTTCTTCGGGGCCAACGACGCTTGTCTTCCGGATAGGT ACGGTGGGTTCCAGCACGTGCCTCTTGATGAGTACAAGCTCAACCTACGGTCCATTGTCTTCTTCATTAAGGACTGCTGGCCAAATACAGTGATTCTACT CATAACTCCTCCTCCAATCGATGAAGAGGCTCGCCTCAAGAACCCGTACATGGATAACCCATCGGGTCTACCCGAGAGGACGAACCACGTGGCCGGCGAA TACTCCAAGGGATGCATTGAGGTTGCTAAGGAATGTGGCTGCCCTGTGGTAGACCTATGGACCAAAATGCAACAGTTCCCAAATTGGCAAACTTCTTGCC TCAGCGATGGATTGCACTTGACCCAGTTAGGGAACAAGATAGTGTTTGATGAAGTTGTGAAGAAGCTGGAGGAGCAAGGGCTGAGCGCTGAAACGATGCC GTATGACTTGCCGGTTTTCTCGGACGTAGATTCCAAGGATCCATTGAAGAGCTTTCGAGATTAG
AA sequence Show only first row Show all	>Lus10013941 pacid=23170040 polypeptide=Lus10013941 locus=Lus10013941.g ID=Lus10013941.BGIv1.0 annot-version=v1.0 MAAEKVFPAPTTTMATWAVTVFFGANDACLPDRYGGFQHVPLDEYKLNLRSIVFFIKDCWPNTVILLITPPPIDEEARLKNPYMDNPSGLPERTNHVAGE YSKGCIEVAKECGCPVVDLWTKMQQFPNWQTSCLSDGLHLTQLGNKIVFDEVVKKLEEQGLSAETMPYDLPVFSDVDSKDPLKSFRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	2.6	0.9237
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	4.0	0.9431
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	4.5	0.9278
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	4.5	0.9313
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	6.9	0.9279
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	7.1	0.9280
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	7.5	0.9206
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	8.3	0.9002
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	9.2	0.8962
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	9.4	0.9140

Compare expression of checked genes

Lus10013941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.