Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33860 553 / 0 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 416 / 2e-135 ARF ARF4 auxin response factor 4 (.1) AT5G62000 357 / 2e-112 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 338 / 3e-107 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 332 / 2e-105 ARF ARF18 auxin response factor 18 (.1) AT2G46530 330 / 1e-104 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G37020 332 / 3e-103 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT4G23980 324 / 7e-102 ARF ARF9 auxin response factor 9 (.1.2) AT1G30330 330 / 3e-101 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 329 / 6e-100 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005264 [exp] 1091 / 0 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10043200 [exp] 358 / 1e-112 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 357 / 2e-112 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 348 / 1e-110 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 345 / 2e-109 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10024455 [exp] 343 / 1e-108 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10007386 [exp] 335 / 3e-104 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 334 / 6e-104 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 333 / 1e-103 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050150 [exp] 658 / 0 AT2G33860 562 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.011G059300 [exp] 640 / 0 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 443 / 3e-146 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.015G105300 [exp] 365 / 2e-115 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 362 / 7e-115 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 363 / 2e-114 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 356 / 1e-112 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 345 / 8e-110 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 344 / 8e-109 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 343 / 2e-108 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10013942 pacid=23170024 polypeptide=Lus10013942 locus=Lus10013942.g ID=Lus10013942.BGIv1.0 annot-version=v1.0 ATGGTGGGTATGATAGATCTTAACACGACGGAGGAGGAGGAAACGACGCCGTCTTCCGGTTCTCTGCTCTCTTCTTCTTCCTCAGCTTCGAATGCTGCTG CTTCTTCAGTTCCTTCCTCTCTTTGTTTGGAGCTCTGGCACGCCTGTGCTGGCCCGCTTATTTCGCTTCCCAAAAAGGGGAGTTTGGTCGCTTATCTGCC TCAGGGACACCTGGACCAGCTTCCGGATTATTCGCCGGCGGCGGCGCCGGTGAATCTGCCTCCTCACCTCTTCTGCCGGGTGGTCGATGTCAAGCTCCAT GCTGAAGCTGCAACGGATGAAGTATATGCACAAGTCTCACTTGTTCCTGAGAACGAGCAAACTGAGCTGAAGTTGAGGAGGAGAGGGAGAAATGAAGGTG AAGGAGATGAAGAAGAACTTGCTGTGAAGGCTTCAACACCTCACATGTTCTGCAAAACCCTAACTGCTTCAGATACCAGCACTCATGGCGGATTCTCGGT CCCTCGTAGAGCTGCTGAGGACTGCTTCCCTCCATTGGATTATACTCAGCAAAGGCCGTCCCAGGAGCTGGTGGCAAAGGATCTCCATGGTTTCGAGTGG AGGTTCCGCCATATCTATCGCGGGCAACCGAGGAGGCATTTGCTTACGACTGGGTGGAGCGCGTTTGTTAACAAGAAGAAGCTGGTCTCTGGTGATGCTG TTCTGTTTCTAAGGGGCGAGGATGGTGAGCTGAGACTTGGGGTTCGGAGAGCTGCACAAGTGAAACCATCTGCAACTTTGCCTGTTCTTTTTAGTCAGCT TTCGAGCCACTGCAGTATCTCGGACGTTGCTAATGCTGTCTCACTTAGAAGCGTTTTCAGCGTCTGCTACAACCCCAGGGATAGCTCATCTGAGTTTGTG ATTCCAGTGAATAAGTTCATGAAGAGTCTGGACTACTCATTCTGTGCTGGAATGAGATTCAAGATGCGGTTCGAGACTGAAGATTCATCTGAAAGAAGGT GTTCTGGAATGATAACCGGGATCAGTGACCTCGACCCGGTTCGGTGGCCACGGTCCAAATGGAGGTGCGTTATGGTAAGGTGGGATGATATGGAGGTCAA CCGGCACAGCAGGGTGTCTCCATGGGAAATCGAGGCGTCTGGTTCTGTCTCCAGCAACAGCCACAGTTTCCTAGGATCTGGTCTGAAAAGGACTAGATCT GCAATGCCAGAATTTCCAGTTCCTGATGGAATTGGCGCACCACCGGACTTTGGGGAATCCTCTACTAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATTT CAAGCTTCAACACCCTTTTCGAAGCTGCTGATGGTCGTGATCCCATGAGGTGTTTCCGTGGTAACAACAATGTACCACCGGCACCACCTTCCCGTAAAGG CATAGGCTTTGGTGAATCCGTGGGATTCCATAGGGTCTTGCAAGGTCAAGAAATATTTCCAAGCTCACCGTACGGAAGAGCCCCCCACAACAAGGCTCAA GATTCCAATAATGGTTGCCTTGGAATCTTACCGGGACTTTCCATCCCTGGTATCTCCAGAAATGGTTGGTCTACTTCTACCATGATGCACCAACAGCCAT CGTCCTCTCCGTCATCAGTGTTAACATTCCAGCCAGGCCGAGTTTATAACCATCCCGATGGTGGGAGGCAGGATTACCGGTTGGTTAACAGCACTTCCGA GCCACAAGGTCAATACTACCCCTCTACTGGTATCATCCCGCAGAGGGGTATGCATCTCGCCGAGCCATCAAACGAGCCGATCGTGCCTTCTTCTTTGTGT AAGACCAGCTGCAGATTGTTTGGTTTCTCGCTGACTGACGATAGGACCATTAGTAAGGAAGACCACCAAAGCAGCAACCAAATGCTGCCTTCTCCGACTG GTATGATCAATCCTGAAGGTTCCAATGCAGTTGGAAGGAACTGTACTAATGCCAGCTCTCAAGGGCGGCGGTGA
AA sequence Show only first row Show all	>Lus10013942 pacid=23170024 polypeptide=Lus10013942 locus=Lus10013942.g ID=Lus10013942.BGIv1.0 annot-version=v1.0 MVGMIDLNTTEEEETTPSSGSLLSSSSSASNAAASSVPSSLCLELWHACAGPLISLPKKGSLVAYLPQGHLDQLPDYSPAAAPVNLPPHLFCRVVDVKLH AEAATDEVYAQVSLVPENEQTELKLRRRGRNEGEGDEEELAVKASTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELVAKDLHGFEW RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQVKPSATLPVLFSQLSSHCSISDVANAVSLRSVFSVCYNPRDSSSEFV IPVNKFMKSLDYSFCAGMRFKMRFETEDSSERRCSGMITGISDLDPVRWPRSKWRCVMVRWDDMEVNRHSRVSPWEIEASGSVSSNSHSFLGSGLKRTRS AMPEFPVPDGIGAPPDFGESSTRFHKVLQGQEISSFNTLFEAADGRDPMRCFRGNNNVPPAPPSRKGIGFGESVGFHRVLQGQEIFPSSPYGRAPHNKAQ DSNNGCLGILPGLSIPGISRNGWSTSTMMHQQPSSSPSSVLTFQPGRVYNHPDGGRQDYRLVNSTSEPQGQYYPSTGIIPQRGMHLAEPSNEPIVPSSLC KTSCRLFGFSLTDDRTISKEDHQSSNQMLPSPTGMINPEGSNAVGRNCTNASSQGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	0	1
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	1.0	0.9587
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	3.0	0.9346
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	3.2	0.9361
AT1G73470			unknown protein		Lus10042285 [exp]	3.3	0.9129
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	4.5	0.9329
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	4.9	0.9165
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	5.0	0.9319
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	6.9	0.9270
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	7.3	0.9160
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	7.5	0.8929

Compare expression of checked genes

Lus10013942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.