Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 161 / 4e-49 Protein of unknown function, DUF599 (.1) AT5G24600 112 / 6e-30 Protein of unknown function, DUF599 (.1.2) AT3G18215 101 / 6e-26 Protein of unknown function, DUF599 (.1) AT5G10580 71 / 2e-14 Protein of unknown function, DUF599 (.1.2) AT4G31330 62 / 2e-11 Protein of unknown function, DUF599 (.1) AT5G24790 49 / 9e-07 Protein of unknown function, DUF599 (.1) AT5G43180 40 / 0.0005 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005266 [exp] 404 / 9e-145 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 116 / 5e-31 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 114 / 3e-30 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 110 / 3e-29 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10015590 [exp] 110 / 6e-29 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 105 / 5e-27 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10013944 [exp] 100 / 3e-25 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10000133 [exp] 94 / 4e-23 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10005267 [exp] 94 / 4e-23 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 189 / 4e-60 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 179 / 4e-56 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 119 / 6e-33 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 117 / 5e-32 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 69 / 4e-14 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 54 / 2e-08 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10013943 pacid=23170035 polypeptide=Lus10013943 locus=Lus10013943.g ID=Lus10013943.BGIv1.0 annot-version=v1.0 ATGGGTTACCATAAGGAAGAGCTGGACTTGCTCCTAGTCCCTCTAGGATTGATCATCATGTTCAGCTACAACCTCTTCATCCTCTACAGATACTTGAACC ACCCTCACACCACCGCAATCGGATTTGAGAACAACGACAAACGAGCTTGGGTCGAGAGAATTATGCAGGGAGGGACAGAGAACACCCAAACGGCTCTGCA GGTAATTTCCACGAACAGTTCAGCTGCAACAGTATTAGCTTCCATCTCCCTAACCTTGAGCTCCCTAATCGGAGCCTGGCTCGGAGGCTCAACCCCCAAC GTCTTCCGGAGCGAGCTGATCTACGGCGACACGAGCCGGACGACAATCTCAATCAAGTACATCAGCCTCATGCTCAGCTTCCTCCTCGCTTTCTCCTGTT TCGTTTCCTCCGCGAGGCACTTCGTCCACGCGAATTACCTCATCAGCATCCCTAGCAGTGAGGTTCCGGCGAGAAGCGTGGCGGCAACGGTGATCAAGGC CGGCGATTTCTGGTCCCTGGGGCTGAGAGCTCTGTACTTTGCGCTGAATTTGTTGATGTGGTTCTTCGGACCGGTTCCCATGTTTCTTTCTTCTGTGATC ACGGTGACGCTCCTCTGTGCCGCCGACGGTAACTCGCAGCCGCTGCATCGTCACTCGCCGGTTCCGGCGAAGGCTCGGCACGAAAGCCTGGTTGGGCCTG AGTTAATATAG
AA sequence Show only first row Show all	>Lus10013943 pacid=23170035 polypeptide=Lus10013943 locus=Lus10013943.g ID=Lus10013943.BGIv1.0 annot-version=v1.0 MGYHKEELDLLLVPLGLIIMFSYNLFILYRYLNHPHTTAIGFENNDKRAWVERIMQGGTENTQTALQVISTNSSAATVLASISLTLSSLIGAWLGGSTPN VFRSELIYGDTSRTTISIKYISLMLSFLLAFSCFVSSARHFVHANYLISIPSSEVPARSVAATVIKAGDFWSLGLRALYFALNLLMWFFGPVPMFLSSVI TVTLLCAADGNSQPLHRHSPVPAKARHESLVGPELI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	1.0	0.9808
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	2.0	0.9742
AT1G20180			Protein of unknown function (D...		Lus10010144 [exp]	2.4	0.9630
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	3.0	0.9720
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	4.5	0.9715
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	7.1	0.9671
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	9.9	0.9050
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	10.2	0.9394
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	15.2	0.9490
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	16.1	0.9438

Compare expression of checked genes

Lus10013943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.