Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000133 [exp] 332 / 1e-116 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10005267 [exp] 332 / 1e-116 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 45 / 1e-05 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 65 / 2e-12 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013944 pacid=23170056 polypeptide=Lus10013944 locus=Lus10013944.g ID=Lus10013944.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAAAAGGATTACCTCGACTTGTTCTTAGTACCAGCTGGTCTTCTCGTCCTCTTCACTTACCATCTTTACCTTCTCTACTTGCACCACAAGT CACCTTGCTTGACAACAATCGGCCTCGAGGCATTCGACAAGATCAACTGGGTTCAAAGCATCGTCAGGGCAAAATGGCGAGAAGGGCACGTTAGACAGAG CAGCGGCAGTGATCACAGGCAACACAACATCAGGGACATACCTCGCGACATTCTGCCTGACTCTAAGCTCGCTAGTCGGCACATTTCTCGGACCCTCGAA CAGCTTAATCAACGGGAACAGGATTTATGGAGACACGAGGCCGTCCACCCTTTTCATCAAGGACATCACGCTCCTCTCCTGTTTACTCCTCGCGTTCTAC GGATTCGTTCACGCTGTGAGGCTTCTGGTCCATGCCAACTACTTGCTGTCGATGAGCAGTCCGGAGAACAAGGACCTGGAGAAGAAAATCGAGTTCATGG TTACGAGAGGCGGATACTCTTGGGTGCTTGGACTCAGAGCGCTTTACTTTGCTCTCAGTGTGCTTGTCTGGTTCTTCGGCCCCATACCGATGTTCGCTTC TTGCATCATCATGGTCATCGTCCTGTATTACAACGACATTTACATAGTCAAGTTGCACAACCTGTATTGTCAAATCCCAGAAAGCTATAG
AA sequence Show only first row Show all	>Lus10013944 pacid=23170056 polypeptide=Lus10013944 locus=Lus10013944.g ID=Lus10013944.BGIv1.0 annot-version=v1.0 MEFEKDYLDLFLVPAGLLVLFTYHLYLLYLHHKSPCLTTIGLEAFDKINWVQSIVRAKWREGHVRQSSGSDHRQHNIRDIPRDILPDSKLASRHISRTLE QLNQREQDLWRHEAVHPFHQGHHAPLLFTPRVLRIRSRCEASGPCQLLAVDEQSGEQGPGEENRVHGYERRILLGAWTQSALLCSQCACLVLRPHTDVRF LHHHGHRPVLQRHLHSQVAQPVLSNPRKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	4.9	0.8985
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	5.2	0.8979
AT2G27550		ATC	centroradialis (.1)		Lus10019541 [exp]	6.6	0.8677
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	7.7	0.8908
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	8.0	0.8948
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	9.5	0.9004
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	9.9	0.8826
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	16.7	0.8820
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029183 [exp]	18.4	0.8023
AT3G19200			unknown protein		Lus10014046 [exp]	22.5	0.8564

Compare expression of checked genes

Lus10013944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.