Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 172 / 2e-50 O-methyltransferase family protein (.1) AT4G35150 166 / 9e-49 O-methyltransferase family protein (.1) AT1G77520 133 / 2e-35 O-methyltransferase family protein (.1) AT5G54160 132 / 2e-35 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 125 / 9e-33 O-methyltransferase family protein (.1.2) AT3G53140 120 / 6e-31 O-methyltransferase family protein (.1) AT1G77530 112 / 4e-28 O-methyltransferase family protein (.1) AT1G63140 112 / 7e-28 O-methyltransferase family protein (.1.2) AT5G53810 112 / 9e-28 O-methyltransferase family protein (.1) AT1G62900 106 / 3e-27 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 332 / 8e-113 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 323 / 3e-109 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10015311 [exp] 295 / 2e-98 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10018629 [exp] 285 / 3e-94 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 278 / 1e-91 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 276 / 1e-90 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 252 / 2e-81 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10032304 [exp] 249 / 3e-80 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10039744 [exp] 238 / 8e-76 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059500 [exp] 395 / 2e-137 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1) Potri.004G050400 [exp] 386 / 4e-134 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 347 / 9e-119 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 336 / 2e-114 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 334 / 2e-113 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 330 / 4e-112 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 311 / 1e-104 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 309 / 1e-103 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 303 / 1e-101 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 302 / 4e-101 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10013945 pacid=23170079 polypeptide=Lus10013945 locus=Lus10013945.g ID=Lus10013945.BGIv1.0 annot-version=v1.0 ATGGATGCCAATGGAGACACCAGTGATCTCTTTCAAGCTCAAACCCACATCTACAAACACATGTACAGCTTCATAGAATCCATGTCTCTCAAATGCGCCA TCCAGCTCAGCATCCCTGACATAGTCCACAACCACAAACGACCCATCACCCTCCTCGAATTGGCCTCGTCTCTTGACGTCCCATCATCGAAGACCAACTC CCTCGAGCGCTTGATGCGAATCCTCGTCCACTCAGGATTCTTCTCCATCGAAGGTCATGGTTATGTCCTCACACCATGTTCTGAGATCCTAGTCAAGGAC AGCCCGACTAGCTTGGCATCAACCGTTACAGCGGTCCTCGATCCCTTGCTTGTGAGCCCATGGTTCTCTTTTACCGACTCGCTTCTACAGAGTGATGACT CGACCTCAAATTCGAGTCATCACCCTGTGTTTGAATTTGGAACCCACCACCAAGATGGGCTCATGGAGTCGTTGCACGAAGCAATGGCTAGCGATTCGAG GATTGTGAGCTCGATTATCGATGAACATGGGAAGGTCTTTGAAGGGTTGGGATCTCTTGTTGATATTGGTGGTGGTAATGGAACTATGGCTAGAGCTGTT TGTGACAAGTTTCCATTGATGGATTGTGTTGTGTTGGATCTTCCACAAGTTGTTGATGGCTTGTCGGACGGAAAGAGGTTGAAGTTCGTTGGTGGTGACA TGTTTGAGTATATCCCTTCTGCAGAAGCCATACTGATCAAGTCTGTTATGCACAACTGGACCGACGAGGACTGCATGAAGATACTAAAGAGATGCAAAGA GGCAATCCAAGAGGAGGAGAAGGGGAAGTTGATTCTGATAGAAATGGTGATCGACGAATCGGAAAACGAAGGTGAATTGAGCAACACTAGGCTGTTAATG GACATGGAAATGATGATATTGTGTCAAGGGAAAGAAAGAACTGAAGCAGAATGGAAGAATCTGTTCTTGGAATCTGGATTTAGTCGCTTCACGATCACCC CTACAGCTGGATTGAACTCCATAATTGAAGTTCATCCTTGA
AA sequence Show only first row Show all	>Lus10013945 pacid=23170079 polypeptide=Lus10013945 locus=Lus10013945.g ID=Lus10013945.BGIv1.0 annot-version=v1.0 MDANGDTSDLFQAQTHIYKHMYSFIESMSLKCAIQLSIPDIVHNHKRPITLLELASSLDVPSSKTNSLERLMRILVHSGFFSIEGHGYVLTPCSEILVKD SPTSLASTVTAVLDPLLVSPWFSFTDSLLQSDDSTSNSSHHPVFEFGTHHQDGLMESLHEAMASDSRIVSSIIDEHGKVFEGLGSLVDIGGGNGTMARAV CDKFPLMDCVVLDLPQVVDGLSDGKRLKFVGGDMFEYIPSAEAILIKSVMHNWTDEDCMKILKRCKEAIQEEEKGKLILIEMVIDESENEGELSNTRLLM DMEMMILCQGKERTEAEWKNLFLESGFSRFTITPTAGLNSIIEVHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10016268 [exp]	2.6	0.9287
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	4.6	0.9456
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	4.7	0.9204
AT1G70505			unknown protein		Lus10030895 [exp]	7.7	0.9204
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	8.5	0.9408
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	8.9	0.9317
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	9.3	0.9436
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	9.4	0.9144
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	12.2	0.9318
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019669 [exp]	12.3	0.8690

Compare expression of checked genes

Lus10013945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.