Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24600 258 / 1e-86 Protein of unknown function, DUF599 (.1.2) AT3G18215 213 / 7e-69 Protein of unknown function, DUF599 (.1) AT4G31330 133 / 1e-37 Protein of unknown function, DUF599 (.1) AT5G10580 121 / 5e-33 Protein of unknown function, DUF599 (.1.2) AT5G24790 109 / 2e-28 Protein of unknown function, DUF599 (.1) AT5G46060 106 / 2e-27 Protein of unknown function, DUF599 (.1) AT5G43180 76 / 4e-16 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005272 [exp] 400 / 2e-141 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 245 / 7e-81 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 242 / 8e-80 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 216 / 5e-70 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 144 / 5e-42 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 127 / 3e-35 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 125 / 2e-34 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 121 / 5e-33 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 87 / 1e-20 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001300 [exp] 275 / 3e-93 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 271 / 1e-91 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.001G372900 [exp] 129 / 5e-36 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.006G278000 [exp] 124 / 3e-34 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 100 / 9e-25 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 75 / 1e-15 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10013947 pacid=23170067 polypeptide=Lus10013947 locus=Lus10013947.g ID=Lus10013947.BGIv1.0 annot-version=v1.0 ATGCAGCAGATATCAGTTCTGGATTTCGCTTTGGTCCCCCTCGGACTGATTCTGATGGTGGCTTATCACTTGTGGCTACTCTCCAGGGTGTTGAAATACC CCTCCACGACCACTATCGGCGTCAACGCCATCAGCCGCCGCTTCTGGGTTCGCGCTATGATGGCGGTCGGACCATCTCTTAATAACTTAAGTTATTGGAA TCCAAAGGTTTTTTATATGGAACCCTCGAAGAATGGGGTATTAGCCGTTCAGACACTGCGAAACAACATAATGGCGTCAACACTTTTGGCGACGACAGCC ATCATGCTCTGCTCCCTCATCGTCATGCTCCTCGCCGGCAACCCAGGGACTCGGGTGACGGAGGGCATGGTGTTGGGAGACAAGACCAAAGTTGGCGTAT CCCTCAAGTTCTTCTCTCTCATGCTCTGCTTCCTCACCGCCTTCTTGATGACCGTCCAGTCCATCAGGTACTACAGTCATGCAAGTTTGCTCATCAACGT CCCTATGCCAGCAAAGCCGGCTCATGGCAACGGCGGCGGCAGAAGAGATTATCTTCTGACCGGCGAGTACGTGGCGAGGTCGTTGAACAGAGGAGGGTAT TTCTGGTCATTGGGACTCAGGGGATTCTACTTCTCCCTCCCTCTGTTTATGTGGATATTTGGACCCATCCCAATGTTCTCCAGCTGCTTCGTCCTTGTCT TCGTGCTATATTTCCTCGACTTCACTTCCGACACTAGCGAGATTGCTCATGGACTTCCCAACAATACTGTATCGTCTGTGATCTACGTCGCCGGCGACGA CGATGATGGCCATCAGATCATTCCAGGCCGCTGTAGTGTCTGA
AA sequence Show only first row Show all	>Lus10013947 pacid=23170067 polypeptide=Lus10013947 locus=Lus10013947.g ID=Lus10013947.BGIv1.0 annot-version=v1.0 MQQISVLDFALVPLGLILMVAYHLWLLSRVLKYPSTTTIGVNAISRRFWVRAMMAVGPSLNNLSYWNPKVFYMEPSKNGVLAVQTLRNNIMASTLLATTA IMLCSLIVMLLAGNPGTRVTEGMVLGDKTKVGVSLKFFSLMLCFLTAFLMTVQSIRYYSHASLLINVPMPAKPAHGNGGGRRDYLLTGEYVARSLNRGGY FWSLGLRGFYFSLPLFMWIFGPIPMFSSCFVLVFVLYFLDFTSDTSEIAHGLPNNTVSSVIYVAGDDDDGHQIIPGRCSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	2.4	0.9788
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	3.5	0.9743
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	3.6	0.9586
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	4.2	0.9737
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	4.9	0.9624
AT5G59350			unknown protein		Lus10004955 [exp]	6.9	0.9734
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	7.3	0.9690
					Lus10002555 [exp]	7.4	0.9713
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10016769 [exp]	8.5	0.9344
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	8.9	0.9669

Compare expression of checked genes

Lus10013947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.