Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28510 168 / 9e-54 Optic atrophy 3 protein (OPA3) (.1) AT3G58150 118 / 1e-33 Optic atrophy 3 protein (OPA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005273 [exp] 243 / 4e-83 AT1G28510 239 / 1e-81 Optic atrophy 3 protein (OPA3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059800 [exp] 188 / 7e-62 AT1G28510 186 / 9e-61 Optic atrophy 3 protein (OPA3) (.1) Potri.013G123000 [exp] 155 / 6e-49 AT1G28510 174 / 3e-56 Optic atrophy 3 protein (OPA3) (.1) Potri.019G092900 [exp] 58 / 1e-11 AT1G28510 47 / 9e-08 Optic atrophy 3 protein (OPA3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0225 [flax] [poplar] FtsL PF04977 [flax] [poplar] DivIC Septum formation initiator CL0225 [flax] [poplar] PF07047 [flax] [poplar] OPA3 Optic atrophy 3 protein (OPA3)
Representative CDS sequence Show only first row Show all	>Lus10013949 pacid=23170087 polypeptide=Lus10013949 locus=Lus10013949.g ID=Lus10013949.BGIv1.0 annot-version=v1.0 ATGGTGTTGCCATTGCTGAAGCTGGGAACTTTAGCGGTGAGGACGCTGAGCAAGCCGCTTGCTGCTAAGCTGAAGCAGCAGGCAGCTTACCATCCCAAGT TCCGCCAAATCATCGTCGACATGGCGCAGTTGAATCACCGAATCTCGACGAGGATGCAACGGCGGATCTACAGCCACGTCACGGATGTGGCGATTCGGCC GTTGAATGAGGAGAAAGCTGTCCAGGCTGCCGTCGATCTCATCGGCGAGTTGTTTGTTTTCACGGTTGCAGGGGCTGTTGTAGTATTTGAGGTGCAAAGA AGTGCTAAATCAGAGGCTCGGAAAGAAGCTGCACGGAAGCAAGAACTGGAGGCAATGAGGCAAAGAGACGAGGACTTGGCAAAAGAAGTGGAGAACCTAA GACAAAAGCTGGAAGAAATCGAGCAACTCGCTAGAGGTCGAGGACTCAGCGGCCTTCTTCACTTGAAACCCTCCGTCAAAGAGCCCGAAAGAACGACGAG ACCGGCATAA
AA sequence Show only first row Show all	>Lus10013949 pacid=23170087 polypeptide=Lus10013949 locus=Lus10013949.g ID=Lus10013949.BGIv1.0 annot-version=v1.0 MVLPLLKLGTLAVRTLSKPLAAKLKQQAAYHPKFRQIIVDMAQLNHRISTRMQRRIYSHVTDVAIRPLNEEKAVQAAVDLIGELFVFTVAGAVVVFEVQR SAKSEARKEAARKQELEAMRQRDEDLAKEVENLRQKLEEIEQLARGRGLSGLLHLKPSVKEPERTTRPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28510			Optic atrophy 3 protein (OPA3)...		Lus10013949 [exp]	0	1
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	144.8	0.7742
					Lus10009515 [exp]	170.1	0.7667

Compare expression of checked genes

Lus10013949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.