Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 370 / 1e-127 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 280 / 7e-93 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005274 [exp] 506 / 3e-179 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10033657 [exp] 248 / 2e-80 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2) Lus10017700 [exp] 248 / 3e-80 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050900 [exp] 409 / 8e-143 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.011G060000 [exp] 404 / 8e-141 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 306 / 3e-103 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2) Potri.019G092800 [exp] 306 / 4e-103 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013950 pacid=23170061 polypeptide=Lus10013950 locus=Lus10013950.g ID=Lus10013950.BGIv1.0 annot-version=v1.0 ATGTGCTGCAGTAGGTTTCATCATGACCTAGCTCTGAACGAAGGCCTCCCCGGAACGGGTCCCGTTCTTAGGCCGGGAGGGATTGGCCTCAAAGACGGCT TATTGTTTGCCGCACTTGGTTCAAAGGCAGAGGGGAAAGAAGTCGGTATCCCGGAATGCGAAGGAGCTGCAACTGCCAAGTCTCCTTGGAATGCACCCGA ACTATTCAATCTCTTGGTCCTCGAAGGTGAAACGATCCGTGAATGGCTCTTCTTCGACAAGCCCCGCCGGGCATTCGAGAGCGGAAACAGGAAGCAAAGG TCACTACCAGACTACAGCGGCCGCGGATGGCACGAGTCAAGGAAACAAGTCATGAACGAGTTCGGAGGGCTGAAACGATCCTATTATATGGACCCTCAGC CACTGAACAACTTTGAGTGGCACTTGTACGAGTACGAGATCACCAAGTGCGACGCTTGTGCGCTGTACCGACTCGAACTGAAAGCGGTAGACGGGAAGAA GAGCTCCAAGGGAAAGCTCTCGAACGATTCGGTCGCTCACCTGCAGAAACAGATGGGAAGGCTCACAGCTGAGTTCCCAACTGATAACAAACGCCCTGCT AAAGGAAGACCCAAGATGGATACCAAACTCGGAAATCCTTATCCAGCAGCTAATCGGGTGGTTCCCACGACCGAAGCGTTCGAGTATGGGCTTGGATACA ACTACCTCGGCGATAATATAGATGATTACTTCGTGACGTGA
AA sequence Show only first row Show all	>Lus10013950 pacid=23170061 polypeptide=Lus10013950 locus=Lus10013950.g ID=Lus10013950.BGIv1.0 annot-version=v1.0 MCCSRFHHDLALNEGLPGTGPVLRPGGIGLKDGLLFAALGSKAEGKEVGIPECEGAATAKSPWNAPELFNLLVLEGETIREWLFFDKPRRAFESGNRKQR SLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEITKCDACALYRLELKAVDGKKSSKGKLSNDSVAHLQKQMGRLTAEFPTDNKRPA KGRPKMDTKLGNPYPAANRVVPTTEAFEYGLGYNYLGDNIDDYFVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	0	1
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	1.0	0.9188
AT1G49000			unknown protein		Lus10042953 [exp]	1.7	0.9064
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	4.2	0.8915
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	6.0	0.8642
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	7.9	0.9148
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	8.5	0.9013
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	11.2	0.8938
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	12.8	0.8145
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	14.4	0.8787
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	16.1	0.8790

Compare expression of checked genes

Lus10013950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.