Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29100 331 / 2e-99 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 323 / 2e-96 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT1G05200 302 / 7e-89 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 301 / 1e-88 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G29110 278 / 3e-80 ATGLR2.8 glutamate receptor 2.8 (.1) AT4G35290 275 / 3e-79 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 269 / 5e-77 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G42540 256 / 2e-72 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 254 / 9e-72 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G24720 253 / 2e-71 ATGLR2.2 glutamate receptor 2.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013976 [exp] 1231 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 783 / 0 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10038670 [exp] 340 / 1e-100 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10016031 [exp] 316 / 2e-94 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 305 / 6e-90 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 306 / 8e-90 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 303 / 4e-89 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 301 / 2e-88 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026876 [exp] 270 / 1e-79 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052400 [exp] 833 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 827 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 674 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 647 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 646 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.014G028500 [exp] 430 / 2e-137 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062750 [exp] 397 / 6e-130 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 404 / 9e-128 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028800 [exp] 395 / 3e-125 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.001G374700 [exp] 392 / 4e-123 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10013952 pacid=23170080 polypeptide=Lus10013952 locus=Lus10013952.g ID=Lus10013952.BGIv1.0 annot-version=v1.0 ATGCTCCGACTTGGTATGTTCTTCTTCTTTTTCTTCCTCCTCTTGGTTTCATCCGATGGAGCAAACAGTAACAGAGCAGTCACCAAGATCGGCGCAGTCA TCGAAATGGAAACGAGAATCGGGAGAGAACAGAGACTCGCCATGGAAATTGCTGTGAAAGATTTCGATAATGTTTCCCTCAGCTTCCGGAACTCCTCAGA CCGGTCAGGCAGCAGTCGCTTCCTCCTCCTCGCCTACGCGGCGGAGGAGCTGATCAGAGACGAATCGGCGGAGGTCATCTTCGTCGGAAAGGACAGTTGG GAGGAGGCAGTTTTGGTCGCCGGAGTGGTGGGGCAAATTCCGGTGGTCACATTTGCCTCGCCTCCGGTGGCGGCGAGAAATCCGGCGACGACGTTGGTGC CGATTGGTTCTTCTGGTGATCGGCGGCAGATGCGTTGCGTGGCGGCGATGGTACGGTCGTATAATTGGCGGCGGGTGGTGGCCGTGTACCAAGAGAACGG GTTCGGGGCTGATTCTTCTGGTGAGCTGAATCTTCTCTCTGATGCGTTGCGACAAGTCGGAGCAGAGATCGAGCATCGGGTGGTGCTTCCGCTGTTTCCT TCCTCCGTTGGAGACGAGCTGATGACGGTCGTCAAATCGGTGAAATCACGTGTTTTCATCGTCCTCCGTTCGTCGATGACGGCGGCGGTTGAGTTGTTCC GGGAAGCGAATCAGATGGGTTTGGTGGGGCCGGAGACGGCGTGGATTCTGACGGAGACGGTGGCGGATTATCTAGACTCTATGGATTCCTCTGTTTTGTA CTCTGTTCAAGGAGCTCTCGGGATTAAAAACCAACCGGTTGAAACTTATGAATCGTACCGGAGGTTCAGATCGCGGTTCGACCGCGAGTTCAGGCTGAGT TATCCGGATGAGCATTACTCGCAGCCGAGCTTCGCCGCCCTGAGAGCTTACGACGCCGTTTTGAATATCGTACTGGGAAGCAATTCCACCGGTTTGTGGC CGGAGGGAAATGTTGGGTTGAGGATTGTGAATGTGGTGGGGAATGGGTACAAGAAACTCGACTTTTGGGTACCGGAATTTGATGGTTTCTCGTCGGAGGT GAGCAATGGAAGCATTGGGGAAGTGATGTTGAAAGTAGATGGTCCGGTGACTTGGCCGGGGGACATGAAGAGGGAGCCGAAAGGGTGGGGGATGCCGACG GCGGCTAAGCCATTGGTCATCGGAGTTCCAGGGAGGACTACGTTTGAGAAGTTTGTCAAGGTGAGCACCGGGAGCGATGGCAAGAAGAGGTACGAAGGCT TTTGCATCGATCTTTTTAAGAAGGTGATCGAGGTTCTTGGCTATGACCTTCCTTACGAGTTCGTACCTTACTACGGTAAGTACGAGGACTTGGTGGACCA TGTGGCCAACAAGACCTACGATGCGATCGTAGGAGACATGACCATTCTAGCACATAGGTCGGATAAAGTGGAGTTCACGCAACCATTTGCGGAATCGGGT CTTTCGATGATCGTACCTGCCAAGTCAGAGAAATCAGCGTGGATGTTCATGAAGCCATTCACCATGGAAATGTGGCTGGTAACCGGGACGATCTTGATCT ATACTATGCTCGTCATATGGTTCTTGGAACACCAGACGAATCCTGACTTCAAAGGTCCATTGAGGAACCAGATGGGGACCGCTATTCTCTTCACTTTCTC CTCGCTCTTCTTCGCCCACAGAGAGAAAGTCTACAGCAATCTGACAAGAGTTGTTCTGGTGGTATGGCTGTTTGTGGTGTTGATTCTGAACTCGAGCTAC ACGGCCAGCTTGACATCCATGCTCACAGTCCTCCAACTGAAACCCAACGTAAGCGACATCGACTGGCTTCGTCGGAACGGGCTTAGAGTCGGGTGCCACG GAGATTCGTTCGTGAGGAACTACCTGGAGAAGGTGCTGGAATTCAAAGTGGACAACATCCAGAATGTAGACAGCGAGTACAAGTACGGAGATGAATTCGA CACCAACCACATCTCTGCTGCATTTCTGGAGCTTCCGTACCAGGACTTCATCAACCACTACTGCAGGTGGTTCACCGCCACAGTACAGACATTCCGATTC GGAGGACTGGGGTTCGTGTTCCAGAAGGGGTCTCCTGTAACGGCTGACGTGTCGAAGGCCATTCTTCAGCTGTCCGAAGTCGGACAGCTGAAGAAATTGG AAGAGACTTGGTTCGCTCCGTCGAGGGAGTGCTCGTCCAGTTCGAGTGAAGAAGATGGAGCTACTGAAAGCTTGAGCCTGCAGAACTTCTGGGGTATCTA CGTTGTATCCGGTGCCACTTCAACTGTCTGCTTGGTGATCTGTCTGTTTCACTTGATGTCGACGAAGTATTGCAAGGGAGAAGATCACCGAGGAGATCTT AGTGTCTGGAATAAGTCTGTTATGTTAGCAAAGTACCTTTACTATGGTAAGGCGGCTATCGGAAGAGTCTCTCCGATACCGACAGTGATGGCAGCTTCAT CACCTGGTGCTGGTGACCCTCCTCAGACTCCTGAGGATCCAAGGATTCCAGTTACTGTTGTATAG
AA sequence Show only first row Show all	>Lus10013952 pacid=23170080 polypeptide=Lus10013952 locus=Lus10013952.g ID=Lus10013952.BGIv1.0 annot-version=v1.0 MLRLGMFFFFFFLLLVSSDGANSNRAVTKIGAVIEMETRIGREQRLAMEIAVKDFDNVSLSFRNSSDRSGSSRFLLLAYAAEELIRDESAEVIFVGKDSW EEAVLVAGVVGQIPVVTFASPPVAARNPATTLVPIGSSGDRRQMRCVAAMVRSYNWRRVVAVYQENGFGADSSGELNLLSDALRQVGAEIEHRVVLPLFP SSVGDELMTVVKSVKSRVFIVLRSSMTAAVELFREANQMGLVGPETAWILTETVADYLDSMDSSVLYSVQGALGIKNQPVETYESYRRFRSRFDREFRLS YPDEHYSQPSFAALRAYDAVLNIVLGSNSTGLWPEGNVGLRIVNVVGNGYKKLDFWVPEFDGFSSEVSNGSIGEVMLKVDGPVTWPGDMKREPKGWGMPT AAKPLVIGVPGRTTFEKFVKVSTGSDGKKRYEGFCIDLFKKVIEVLGYDLPYEFVPYYGKYEDLVDHVANKTYDAIVGDMTILAHRSDKVEFTQPFAESG LSMIVPAKSEKSAWMFMKPFTMEMWLVTGTILIYTMLVIWFLEHQTNPDFKGPLRNQMGTAILFTFSSLFFAHREKVYSNLTRVVLVVWLFVVLILNSSY TASLTSMLTVLQLKPNVSDIDWLRRNGLRVGCHGDSFVRNYLEKVLEFKVDNIQNVDSEYKYGDEFDTNHISAAFLELPYQDFINHYCRWFTATVQTFRF GGLGFVFQKGSPVTADVSKAILQLSEVGQLKKLEETWFAPSRECSSSSSEEDGATESLSLQNFWGIYVVSGATSTVCLVICLFHLMSTKYCKGEDHRGDL SVWNKSVMLAKYLYYGKAAIGRVSPIPTVMAASSPGAGDPPQTPEDPRIPVTVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	1.7	0.8954
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	2.4	0.8444
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	3.5	0.8371
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	7.5	0.8099
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	7.7	0.8261
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10018826 [exp]	7.7	0.7984
AT3G50910			unknown protein		Lus10041772 [exp]	8.1	0.7985
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	9.5	0.7857
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	12.1	0.8119
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	12.4	0.8084

Compare expression of checked genes

Lus10013952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.